| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,632,424 | (A)7→6 | intergenic (‑58/+21) | BW25113_RS08135 ← / ← BW25113_RS25620 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,632,418 | 0 | A | . | 100.0% | 102.7 / NA | 24 | intergenic (‑52/+27) | BW25113_RS08135/BW25113_RS25620 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (12/12); total (12/12) | |||||||||||
TTTATGATCTCCGGTCAGAGATGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTTAAAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACTTTTTTAAATCCAACGACAGACGGCTGG > NZ_CP009273/1632286‑1632544 | tttATGATCTCCGGTCAGAGATGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTTaaaaaac > 1:232468/1‑138 (MQ=255) tATGATCTCCGGTCAGAGATGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTTaaaaaacta > 1:258535/1‑136 (MQ=255) tcCGGTCAGAGATGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGAtttt > 1:336215/1‑139 (MQ=255) gagaTGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCatga < 2:232468/139‑1 (MQ=255) gagaTGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCatga < 1:242816/139‑1 (MQ=255) agaTGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCatgat > 2:321326/1‑139 (MQ=255) gAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTAc > 2:150349/1‑139 (MQ=255) aaCCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCg < 1:125446/139‑1 (MQ=255) ccTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCgtag > 2:222410/1‑139 (MQ=255) aTTACAGTAAGGTGTGTTTTTTCGCCATTTTGATATTCACGCATTATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGt < 2:336215/139‑1 (MQ=255) aCAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTAt < 2:258535/138‑1 (MQ=255) aCAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTAt < 1:321326/138‑1 (MQ=255) tgtgtTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCg < 2:235586/115‑1 (MQ=255) tgtgtTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCg > 1:235586/1‑115 (MQ=255) gtTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGa > 2:101076/1‑138 (MQ=255) cGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAgg < 2:54781/139‑1 (MQ=255) tgGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCAt < 1:185345/99‑1 (MQ=255) tgGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCAt > 2:185345/1‑99 (MQ=255) tCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACtt > 2:54895/1‑139 (MQ=255) aGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCAt < 1:427127/86‑1 (MQ=255) aGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCAt > 2:427127/1‑86 (MQ=255) aGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACttttt > 1:430880/1‑139 (MQ=255) cTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACTTTTTTAAATCCAACGACa < 2:430880/139‑1 (MQ=255) tgctgGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACTTTTTTAAATCCAACGACAGACGGCt > 1:76043/1‑139 (MQ=255) ctgGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACTTTTTTAAATCCAACGACAGACGGCt < 1:54895/137‑1 (MQ=255) ctgGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACTTTTTTAAATCCAACGACAGACGGCTgg > 1:382267/1‑139 (MQ=255) | TTTATGATCTCCGGTCAGAGATGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTTAAAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACTTTTTTAAATCCAACGACAGACGGCTGG > NZ_CP009273/1632286‑1632544 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |