| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,572,235 | A→G | intergenic (‑149/+75) | gntR ← / ← yhhW | gluconate operon transcriptional repressor GntR/quercetin 2,3‑dioxygenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,572,235 | 0 | A | G | 100.0% | 93.6 / NA | 29 | intergenic (‑149/+75) | gntR/yhhW | gluconate operon transcriptional repressor GntR/quercetin 2,3‑dioxygenase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (15/14); total (15/14) | |||||||||||
AGATAGATTCTCTTAGTTTAACACGGACACATCAGAACCTTCCCGGGGAAAACAGTGCTTGTTTACAATTATTAGATATACACTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGAAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACCGGCGGCAGATCGAACAGTAACACTTCGCTGTCGCTATCCGCA > NZ_CP009273/3572106‑3572358 | agatagatTCTCTTAGTTTAACACGGACACATCAGAACCTTCCCGGGGAAAACAGTGCTTGTTTACAATTATTAGATATACACTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACAt > 2:370400/1‑139 (MQ=255)agatagatTCTCTTAGTTTAACACGGACACATCAGAACCTTCCCGGGGAAAACAGTGCTTGTTTACAATTATTAGATATACACTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACAt > 2:113042/1‑139 (MQ=255) gatTCTCTTAGTTTAACACGGACACATCAGAACCTTCCCGGGGAAAACAGTGCTTGTTTACAATTATTAGATATACACTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCa < 1:370400/139‑1 (MQ=255) acacGGACACATCAGAACCTTCCCGGGGAAAACAGTGCTTGTTTACAATTATTAGATATACACTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGgagcgag > 2:263441/1‑139 (MQ=255) cacaTCAGAACCTTCCCGGGGAAAACAGTGCTTGTTTACAATTATTAGATATACACTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGaa < 2:408338/139‑1 (MQ=255) cacaTCAGAACCTTCCCGGGGAAAACAGTGCTTGTTTACAATTATTAGATATACACTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGaa < 2:254881/139‑1 (MQ=255) acaTCAGAACCTTCCCGGGGAAAACAGTGCTTGTTTACAATTATTAGATATACACTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAg < 1:464166/139‑1 (MQ=255) gggAAAACAGTGCTTGTTTACAATTATTAGATATACACTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAaggcaggc > 1:300796/1‑139 (MQ=255) tACAATTATTAGATATACACTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAg > 2:410145/1‑139 (MQ=255) attattAGATATACACTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGttt > 1:137480/1‑138 (MQ=255) acacTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACcggcgg > 2:487667/1‑137 (MQ=255) aaTCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACCGGCGGCAGATCg < 1:126230/138‑1 (MQ=255) aTCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACCGGCGGCAGATCGaa > 1:230018/1‑139 (MQ=255) ttGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAagg < 1:450493/88‑1 (MQ=255) ttGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAagg > 2:450493/1‑88 (MQ=255) aTCGCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACCGGCGGCAGATCGAACAGTAacac < 2:300796/139‑1 (MQ=255) gCATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACCGGCGGCAGATCGAACAGTAACACtt < 1:180420/138‑1 (MQ=255) cATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACCGGCGGTAGATCGAACAGTAACACTTCg < 1:418802/139‑1 (MQ=255) cATTGTGCTAACGACGCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACCGGCGGCAGATCGAACAGTAACACTTCg > 1:52984/1‑139 (MQ=255) acgacgCGGCAAAACCCCGGGAGCGTACATCAGCACGCGAc > 2:173064/1‑41 (MQ=255) acgacgCGGCAAAACCCCGGGAGCGTACATCAGCACGCGAc < 1:173064/41‑1 (MQ=255) acgacgCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGtt < 1:158893/90‑1 (MQ=255) acgacgCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGtt > 2:158893/1‑90 (MQ=255) acgacgCGGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACCGGCGGCAGATCGAACAGTAACACTTCGCTGTCGCTAt > 1:18228/1‑139 (MQ=255) gcgGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAagg > 2:275898/1‑65 (MQ=255) gcgGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAagg < 1:275898/65‑1 (MQ=255) gcgGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACCGGCGGCAGATCGAACAGTAACACTTCGCTGTCGCTATCCGCa < 2:230018/139‑1 (MQ=255) gcgGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACCGGCGGCAGATCGAACAGTAACACTTCGCTGTCGCTATCCGCa > 2:365076/1‑139 (MQ=255) gcgGCAAAACCCCGGGAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACCGGCGGCAGATCGAACAGTAACACTTCGCTGTCGCTATCCGCa < 2:80181/139‑1 (MQ=255) | AGATAGATTCTCTTAGTTTAACACGGACACATCAGAACCTTCCCGGGGAAAACAGTGCTTGTTTACAATTATTAGATATACACTAAATCAATTGCATCGCATTGTGCTAACGACGCGGCAAAACCCCGGAAGCGTACATCAGCACGCGACCGGAGCGAGCGAGGAAGCCTGCAAAAAGGCAGGCTTCAAAGATGCCGTTGAGTTTTAAACCGGCGGCAGATCGAACAGTAACACTTCGCTGTCGCTATCCGCA > NZ_CP009273/3572106‑3572358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |