| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 557,194 | A→G | Q681R (CAG→CGG) | sfmD → | fimbrial biogenesis usher protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 557,194 | 0 | A | G | 100.0% | 94.2 / NA | 27 | Q681R (CAG→CGG) | sfmD | fimbrial biogenesis usher protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (17/10); total (17/10) | |||||||||||
AGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGGCGCAGGCGGTGTACGCATTGAAAATCAAACTGGCATTTTAACCGA > NZ_CP009273/557061‑557326 | aGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGGATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGt > 1:192173/1‑139 (MQ=255) cACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCg > 1:484598/1‑139 (MQ=255) tAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGgtgt > 2:270048/1‑139 (MQ=255) tACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGa > 2:84659/1‑138 (MQ=255) tACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGa > 2:71889/1‑138 (MQ=255) ccTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGaaaa < 2:484598/139‑1 (MQ=255) cGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGGATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGGCGGGCATGAAAATgg > 2:263947/1‑139 (MQ=255) gAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATgg > 2:18907/1‑138 (MQ=255) cacGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGagc < 1:270048/139‑1 (MQ=255) gcgcCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCtt > 2:323033/1‑138 (MQ=255) cGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTAGGGGa > 2:483896/1‑139 (MQ=255) gCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGagcc > 1:378505/1‑116 (MQ=255) gCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGagcc < 2:378505/116‑1 (MQ=255) ggggCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGGCGCAgg < 2:183224/139‑1 (MQ=255) gggCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGGCGCAGGc < 1:323033/139‑1 (MQ=255) ggCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGgcg > 1:186394/1‑133 (MQ=255) ggCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGgcg < 2:186394/133‑1 (MQ=255) ggTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTa > 1:139017/1‑95 (MQ=255) ggTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGgcgc < 1:1585/130‑1 (MQ=255) ggTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGgcgc > 2:1585/1‑130 (MQ=255) ggTATAACTACGACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGAATGAAAATGGCATAACGCTGAGCCAGCCTTTa < 2:139017/95‑1 (MQ=255) gACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGagcc > 2:1622/1‑76 (MQ=255) gACCGCGATCAACATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGagcc < 1:1622/76‑1 (MQ=255) cATGACGTTAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGGCGCAGGCGGTGTACGCATTGAAAATCAAACTGGCa > 1:201154/1‑139 (MQ=255) tAACTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGGCGCAGGCGGTGTACGCATTGAAAATCAAACTGGCATTTTAAcc > 2:112643/1‑139 (MQ=255) aCTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGGGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGGCGCAGGCGGTGTACGCATTGAAAATCAAACTGGCATTTTAACCGa < 1:18907/139‑1 (MQ=255) aCTGGCGGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGGCGCAGGCGGTGTACGCATTGAAAATCAAACTGGCATTTTAACCGa > 1:280118/1‑139 (MQ=255) | AGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGGCGCAGGCGGTGTACGCATTGAAAATCAAACTGGCATTTTAACCGA > NZ_CP009273/557061‑557326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |