| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,976,582 | T→G | Y147S (TAC→TCC) | araH ← | arabinose ABC transporter permease AraH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,976,582 | 0 | T | G | 100.0% | 96.6 / NA | 26 | Y147S (TAC→TCC) | araH | arabinose ABC transporter permease AraH |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (12/14); total (12/14) | |||||||||||
AGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACG > NZ_CP009273/1976450‑1976707 | agcagcAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGcc < 2:198899/138‑1 (MQ=255) cagcaAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGa > 2:105201/1‑139 (MQ=255) cagcaAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGa > 2:328076/1‑139 (MQ=255) cagcaAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGa > 2:239378/1‑139 (MQ=255) aCCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGa < 1:223294/139‑1 (MQ=255) gcgACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCa < 2:159253/139‑1 (MQ=255) gcgACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCa < 1:85889/139‑1 (MQ=255) aGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCag < 1:366957/139‑1 (MQ=255) aggcagACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCatttatt < 1:75935/139‑1 (MQ=255) ccAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGc > 2:163724/1‑138 (MQ=255) ccAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCg < 1:163724/139‑1 (MQ=255) ttGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATaa > 1:256305/1‑139 (MQ=255) ggCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTAACCG‑CTGGAATGGTGGACGCCAGGCCTCGGACCATCTGCCTCGTTGCCCATGTCGGGGTCAGAACCTTTATTTTCCGGTTGGCGGTAAcc > 2:148420/1‑137 (MQ=255) aGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGa < 2:451922/139‑1 (MQ=255) gggCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCt > 2:128397/1‑65 (MQ=255) gggCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCt < 1:128397/65‑1 (MQ=255) ggCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGAcc < 1:105201/139‑1 (MQ=255) ggCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGAc > 2:115524/1‑138 (MQ=255) cATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGaa < 1:239378/138‑1 (MQ=255) cGATACCGACCGCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGccc < 2:256305/137‑1 (MQ=255) cgaccgCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGAt < 1:399455/97‑1 (MQ=255) cgaccgCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGAt > 2:399455/1‑97 (MQ=255) accgCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGAc > 2:192789/1‑110 (MQ=255) accgCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGAc < 1:192789/110‑1 (MQ=255) accgCTTTACCGTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAAcc > 1:246388/1‑139 (MQ=255) gTCTGAAATGATGGACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACg > 2:9641/1‑139 (MQ=255) | AGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAGATTGGCGCAGGCAGACCGAACCAGTTGGCGTAACCAAGGGCAAAGAAGCTTTCATCTTCGATACCGACCGCTTTACCGTCTGAAATGATGTACGCCAGACCTCGAACAATCTGCATCGTTGCCAATGTCGTGATCAGAGCATTTATTTTCAGTTTGGCGATAACAAAGCCATTGACCAGGCCACAGAGAACGCCCAGCAACAACCCCGCTGCCACG > NZ_CP009273/1976450‑1976707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |