| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,154,426 | A→G | I854V (ATC→GTC) | mdtC → | multidrug efflux RND transporter permease subunit MdtC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,154,426 | 0 | A | G | 100.0% | 88.8 / NA | 24 | I854V (ATC→GTC) | mdtC | multidrug efflux RND transporter permease subunit MdtC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (5/19); total (5/19) | |||||||||||
CCGACCGGAAAATCGCTCTCGGACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGATCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGTTGGCGCTG > NZ_CP009273/2154291‑2154551 | ccGACCGGAAAATCGCTCTCGGACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTcc < 2:302604/139‑1 (MQ=255) ggACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc < 2:66843/139‑1 (MQ=255) ggACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc < 2:424329/139‑1 (MQ=255) ggACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc < 2:375457/139‑1 (MQ=255) ggACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc < 2:165385/139‑1 (MQ=255) ggACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc < 1:419463/139‑1 (MQ=255) gACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCa < 1:137279/139‑1 (MQ=255) gACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCa < 2:159225/139‑1 (MQ=255) aCGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCAc < 1:406466/139‑1 (MQ=255) aCGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCAc < 1:466522/139‑1 (MQ=255) aCGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCAc < 1:353551/139‑1 (MQ=255) cgatcgatCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGt < 1:358463/139‑1 (MQ=255) aCCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTAc < 2:14209/138‑1 (MQ=255) tGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGAt > 1:417182/1‑139 (MQ=255) ttttGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc < 2:103423/73‑1 (MQ=255) ttttGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc > 1:103423/1‑73 (MQ=255) cACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTcg > 1:370938/1‑139 (MQ=255) ggCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTcggcg < 2:280395/139‑1 (MQ=255) ccAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGagag < 2:196757/84‑1 (MQ=255) ccAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGagag > 1:196757/1‑84 (MQ=255) agaCGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGtt < 1:181579/139‑1 (MQ=255) gATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc < 1:462916/40‑1 (MQ=255) gATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc > 2:462916/1‑40 (MQ=255) aaCTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGTTGGCGCTg < 2:137929/138‑1 (MQ=255) | CCGACCGGAAAATCGCTCTCGGACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGATCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGTTGGCGCTG > NZ_CP009273/2154291‑2154551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |