| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,777,187 | T→C | pseudogene (1184/1374 nt) | BW25113_RS25705 ← | DUF5507 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,777,187 | 0 | T | C | 100.0% | 96.9 / NA | 27 | pseudogene (1184/1374 nt) | BW25113_RS25705 | DUF5507 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (13/14); total (13/14) | |||||||||||
TTCTCAACGGGATCATCCTCAGAGGAACTATCATCAAAGTCATCATCCATAAATAAAATATCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTTCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAATGACGTTCCCCAGTTCACATATTGAATATCATAGTTACTGAAGTTCT > NZ_CP009273/2777052‑2777316 | ttCTCAACGGGATCATCCTCAGAGGAACTATCATCAAAGTCATCATCCATAAATAAAATATCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGc > 1:119976/1‑139 (MQ=255) tcatcaAAGTCATCATCCATAAATAAAATATCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTActc < 2:185387/138‑1 (MQ=255) atcaAAGTCATCATCCATAAATAAAATATCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCttg > 2:338407/1‑139 (MQ=255) tcatcaTCCATAAATAAAATATCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAg < 2:174670/139‑1 (MQ=255) aataTCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGAt < 1:117559/100‑1 (MQ=255) aataTCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGAt > 2:117559/1‑100 (MQ=255) aataTCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATa > 1:168478/1‑139 (MQ=255) tatCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATaca < 1:366027/139‑1 (MQ=255) tcGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTcac < 2:407641/80‑1 (MQ=255) tcGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTcac > 1:407641/1‑80 (MQ=255) tcGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAg > 2:113024/1‑139 (MQ=255) tGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACa < 2:192479/139‑1 (MQ=255) ccACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATc < 1:272605/139‑1 (MQ=255) ccACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACT‑CACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTTTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATc > 1:332214/1‑138 (MQ=255) cGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGGATCAACATCaaa > 2:40802/1‑139 (MQ=255) gTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCAt < 1:357028/82‑1 (MQ=255) gTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCAt > 2:357028/1‑82 (MQ=255) gTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAAt > 1:317715/1‑138 (MQ=255) gTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAATGACGTTcc < 2:317715/139‑1 (MQ=255) ttattaCGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGGATCAACATCAAACAATGACGTTCCCCAGTTcaca > 1:269474/1‑138 (MQ=255) ttaCGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAATGACGTTCCCCAGTTCACATAtt < 1:113024/139‑1 (MQ=255) ttaCGATCAGTCAATACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAATGACGTTCCCCAGTTCACATAtt < 2:467515/139‑1 (MQ=255) aaTACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAATGACGTTCCCCAGTTCACATATTGAATATCATAGt < 2:82026/139‑1 (MQ=255) aaTACTCCACTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGGATCAACATCAAACAATGACGTTCCCCAGTTCACATATTGAATATCATAGt < 2:102593/139‑1 (MQ=255) aCTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGGATCAACATCAAACAATGACGTTCCCCAGTTCACata < 1:398566/117‑1 (MQ=255) aCTTAAACCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGGATCAACATCAAACAATGACGTTCCCCAGTTCACata > 2:398566/1‑117 (MQ=255) aaaCCGTTTCCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAATGACGTTCCCCAGTTCACATATTGAATATCATAGTTACTGAATTTCt > 2:406122/1‑139 (MQ=255) | TTCTCAACGGGATCATCCTCAGAGGAACTATCATCAAAGTCATCATCCATAAATAAAATATCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTTCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAATGACGTTCCCCAGTTCACATATTGAATATCATAGTTACTGAAGTTCT > NZ_CP009273/2777052‑2777316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |