| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,632,424 | (A)7→6 | intergenic (‑58/+21) | BW25113_RS08135 ← / ← BW25113_RS25620 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,632,418 | 0 | A | . | 100.0% | 98.9 / NA | 23 | intergenic (‑52/+27) | BW25113_RS08135/BW25113_RS25620 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (13/10); total (13/10) | |||||||||||
TATGATCTCCGGTCAGAGATGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTTAAAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACTTTTTTAAATCCAACGACAGACGGCTGGCATTTAAG > NZ_CP009273/1632288‑1632552 | tATGATCTCCGGTCAGAGATGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTTaaaaaacta > 2:215171/1‑136 (MQ=255) tcCGGTCAGAGATGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTTaaaa > 2:212642/1‑127 (MQ=255) tcCGGTCAGAGATGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTTaaaa < 1:212642/127‑1 (MQ=255) tcCGGTCAGAGATGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGAtttt > 1:358805/1‑139 (MQ=255) gTCAGAGATGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGAttttttt > 1:120165/1‑138 (MQ=255) gAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTa < 1:250520/138‑1 (MQ=255) cGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTAGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCgtagta < 2:120165/137‑1 (MQ=255) gTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCAt < 2:209629/139‑1 (MQ=255) aaGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATc > 1:369423/1‑138 (MQ=255) aGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCg > 1:537923/1‑138 (MQ=255) tgtgtTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCg > 1:324842/1‑115 (MQ=255) tgtgtTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCg < 2:324842/115‑1 (MQ=255) gtTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTAt < 1:279683/126‑1 (MQ=255) gtTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTAt > 2:279683/1‑126 (MQ=255) aCGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGaa < 1:215171/138‑1 (MQ=255) atgGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCat < 1:452016/72‑1 (MQ=255) atgGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCat > 2:452016/1‑72 (MQ=255) aCTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCa < 2:369423/138‑1 (MQ=255) aGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACttttt > 1:118042/1‑139 (MQ=255) aGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACttttt > 1:21044/1‑139 (MQ=255) aGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACttttt > 1:155523/1‑139 (MQ=255) tCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGtt > 1:6747/1‑62 (MQ=255) tCATCGCTGGCACTACCACTGCTGGTTCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGtt < 2:6747/62‑1 (MQ=255) ttCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACTTTTTTAAATCCAACGACa > 1:340725/1‑126 (MQ=255) ttCAGAGTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACTTTTTTAAATCCAACGACa < 2:340725/126‑1 (MQ=255) gagTT‑AAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACTTTTTTAAATCCAACGACAGACGGCTGGCATTTAAg > 2:420420/1‑139 (MQ=255) | TATGATCTCCGGTCAGAGATGGAAACCCTGCGGCCATTACAGTAAGGTGTGTTTTTTCGCCATTTGGATATTCACGCATGATGGTGTTAACTCCAGTCATCGCTGGCACTACCACTGCTGGTTCAGAGTTAAAAAAACTATGATTTTTTTCATGATGTTACCGTAGTATGTGAGTATCCATCGAATAGACACCAAGCAAAAAAGCTCCCGAAGGAGCCTTCATTTTCACTTTTTTAAATCCAACGACAGACGGCTGGCATTTAAG > NZ_CP009273/1632288‑1632552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |