| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,948,189 | T→G | V164G (GTG→GGG) | cmoB → | tRNA 5‑methoxyuridine(34)/uridine 5‑oxyacetic acid(34) synthase CmoB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,948,189 | 0 | T | G | 100.0% | 126.2 / NA | 35 | V164G (GTG→GGG) | cmoB | tRNA 5‑methoxyuridine(34)/uridine 5‑oxyacetic acid(34) synthase CmoB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (18/17); total (18/17) | |||||||||||
TTTAACCGGACGCACCATTCTGGATGTCGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGTGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTGCTTTACCATCGCCGTTCACCGCTGGA > NZ_CP009273/1948058‑1948318 | tttAACCGGACGCACCATTCTGGATGTCGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTaaa < 2:505320/139‑1 (MQ=255) cGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTa > 1:117759/1‑110 (MQ=255) cGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTa < 2:117759/110‑1 (MQ=255) cGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAactact > 1:32396/1‑117 (MQ=255) cGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAactact < 2:32396/117‑1 (MQ=255) ggCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCAtt > 2:8491/1‑139 (MQ=255) gtgGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGtt < 1:303773/126‑1 (MQ=255) gtgGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGtt > 2:303773/1‑126 (MQ=255) gcgcATGATTGGCGCAGGTGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAacta < 2:29492/88‑1 (MQ=255) gcgcATGATTGGCGCAGGTGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAacta > 1:29492/1‑88 (MQ=255) gcgcATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAacta < 2:226515/88‑1 (MQ=255) gcgcATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAacta > 1:226515/1‑88 (MQ=255) cgcATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTAGTGAACAACTTc > 2:465103/1‑139 (MQ=255) cATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGCTCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCg > 2:494025/1‑139 (MQ=255) aTGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCgg < 1:8491/139‑1 (MQ=255) tGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTgg > 2:192432/1‑87 (MQ=255) tGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTgg < 1:192432/87‑1 (MQ=255) gcgcAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCgg < 1:512645/132‑1 (MQ=255) gcgcAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCgg > 2:512645/1‑132 (MQ=255) cgcgcACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCttt > 1:520159/1‑139 (MQ=255) cACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTa > 1:244964/1‑61 (MQ=255) cACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTa < 2:244964/61‑1 (MQ=255) cACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAactact > 2:105325/1‑68 (MQ=255) cACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAactact < 1:105325/68‑1 (MQ=255) cTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCg < 2:207463/139‑1 (MQ=255) cgcgGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTa < 2:401599/56‑1 (MQ=255) cgcgGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTa > 1:401599/1‑56 (MQ=255) cgcgGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGt > 2:394580/1‑67 (MQ=255) cgcgGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGt < 1:394580/67‑1 (MQ=255) cccTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAacta > 2:316981/1‑46 (MQ=255) cccTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAacta < 1:316981/46‑1 (MQ=255) tttCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAgc < 1:104366/49‑1 (MQ=255) tttCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAgc > 2:104366/1‑49 (MQ=255) gCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTGCTTTACCATCGCCGTTCAcc > 2:534377/1‑139 (MQ=255) tGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTGCTTTACCATCGCCGTTCACCGCTGGa < 1:534377/138‑1 (MQ=255) | TTTAACCGGACGCACCATTCTGGATGTCGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGTGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTGCTTTACCATCGCCGTTCACCGCTGGA > NZ_CP009273/1948058‑1948318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |