| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,976,083 | T→G | A313A (GCA→GCC) | araH ← | arabinose ABC transporter permease AraH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,976,083 | 0 | T | G | 100.0% | 50.9 / NA | 16 | A313A (GCA→GCC) | araH | arabinose ABC transporter permease AraH |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (7/9); total (7/9) | |||||||||||
GTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACGGTGCCTAAAATTAAGATACCCGCCACC > NZ_CP009273/1975950‑1976185 | gTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGGTTTGGTGGGGAAAAAAGCTAAAATTTTGCAGAAAAAAACAACAGACAGGGCGTTTCGCTTTTTTTTTGTTAAGGGCGAAGAACACCGCGGcccg > 1:232402/1‑137 (MQ=255) cGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGATTAAGCcgc < 1:254660/139‑1 (MQ=255) tGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGaa < 1:487585/138‑1 (MQ=255) gtggGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGc < 2:191174/139‑1 (MQ=255) ggAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGACATATTAAGCAgg > 2:297920/1‑139 (MQ=255) ggAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAgg > 2:528832/1‑139 (MQ=255) aaCGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATg < 1:147279/139‑1 (MQ=255) ttgCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGAtt > 1:282366/1‑76 (MQ=255) ttgCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGAtt < 2:282366/76‑1 (MQ=255) ttgCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACg < 2:232402/139‑1 (MQ=255) cGCTTTTTGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACg < 1:564485/109‑1 (MQ=255) cGCTTTTTGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACg > 2:564485/1‑109 (MQ=255) tttGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGATTAAGCcgc > 1:770/1‑48 (MQ=255) tttGCTTGTAACGGTCGAAGATCACCGCGGCCAGCAGGATTAAGCcgc < 2:770/48‑1 (MQ=255) ccGCGGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACGGTGCCTAAAATTAAGATACCCGccacc < 1:108030/107‑1 (MQ=255) ccGCGGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACGGTGCCTAAAATTAAGATACCCGccacc > 2:108030/1‑107 (MQ=255) | GTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAATATTAAGCAGGTTCATGGCGTTTTCCACGGTGCCTAAAATTAAGATACCCGCCACC > NZ_CP009273/1975950‑1976185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |