| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,154,426 | A→G | I854V (ATC→GTC) | mdtC → | multidrug efflux RND transporter permease subunit MdtC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,154,426 | 0 | A | G | 100.0% | 81.3 / NA | 23 | I854V (ATC→GTC) | mdtC | multidrug efflux RND transporter permease subunit MdtC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (12/11); total (12/11) | |||||||||||
CCGACCGGAAAATCGCTCTCGGACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGATCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGTTGGCGCTG > NZ_CP009273/2154291‑2154551 | ccGACCGGAAAATCGCTCTCGGACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTcc > 2:391974/1‑139 (MQ=255)ccGACCGGAAAATCGCTCTCGGACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCACAGGTGGTc < 1:342311/138‑1 (MQ=255) ggACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGTCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc < 2:539513/139‑1 (MQ=255) ggACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc < 1:74552/139‑1 (MQ=255) gACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCa < 1:394486/139‑1 (MQ=255) gACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCa < 2:354610/139‑1 (MQ=255) cAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCa > 1:192692/1‑134 (MQ=255) cAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCa < 2:192692/134‑1 (MQ=255) gcggcgATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGtata > 1:537709/1‑139 (MQ=255) gtgtGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACg > 2:327794/1‑138 (MQ=255) gtgtGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACg > 2:381548/1‑138 (MQ=255) tgtgCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTa > 1:440208/1‑139 (MQ=255) ccTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATc > 1:39434/1‑139 (MQ=255) tGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTAc > 1:300912/1‑113 (MQ=255) tGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTAc < 2:300912/113‑1 (MQ=255) ccAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCAc > 1:499996/1‑51 (MQ=255) ccAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCAc < 2:499996/51‑1 (MQ=255) gagaCGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGt < 2:518996/139‑1 (MQ=255) gaCGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc < 2:220464/43‑1 (MQ=255) gaCGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc > 1:220464/1‑43 (MQ=255) gaCGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTa < 1:247567/81‑1 (MQ=255) gaCGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTa > 2:247567/1‑81 (MQ=255) aCTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGTTGGCGCTg > 1:251361/1‑137 (MQ=255) | CCGACCGGAAAATCGCTCTCGGACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGATCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGTTGGCGCTG > NZ_CP009273/2154291‑2154551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |