| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,247,045 | C→T | A194T (GCA→ACA) | nupX ← | NupC/NupG family nucleoside CNT transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,247,045 | 0 | C | T | 100.0% | 14.6 / NA | 5 | A194T (GCA→ACA) | nupX | NupC/NupG family nucleoside CNT transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (2/3); total (2/3) | |||||||||||
TCCCGCCAGGGATCGCCATTAATGATGCCGCCAGCAGATATTCCACAGGCACGCCCAGTGCGGCGTAACCAATCATTGTCGAACCAGCAATCGAGGCCATGCCACTACAAATCGCTGTAAATAATTCATTGCGATTCAGACGAT > NZ_CP009273/2246985‑2247128 | tCCCGCCAGGGATCGCCATTAATGATGCCGCCAGCAGATATTCCACAGGCACGCCCAGTGTGGCGTAACCAATCATTGTCGAACCAGCAATCGAGGCCATGCCACTACAAATCGCTGTAAATAATTCATTGCGAtt > 1:280009/1‑136 (MQ=255) gCCAGGGATCGCCATTAATGATGCCGCCAGCAGATATTCCACAGGCACGCCCAGTGTGGCGTAACCAATCATTGTCGAACCAGCAATCGAGGCCATGCCACTACAAATCGCTGTAAATAATTCATTGCGATTCAGAcga < 1:407878/139‑1 (MQ=255) ccAGGGATCGCCATTAATGATGCCGCCAGCAGATATTCCACAGGCACGCCCAGTGTGGCGTAACCAATCATTGTCGAACCAGCAATCGAGGCCATGCCACTACAAATCGCTGTAAATAATTCATTGCGATTCAGAcgat < 1:490891/139‑1 (MQ=255) acaGGCACGCCCAGTGTGGCGTAACCAATCATTGTCGAACCAGCAATc > 1:318779/1‑48 (MQ=255) acaGGCACGCCCAGTGTGGCGTAACCAATCATTGTCGAACCAGCAATc < 2:318779/48‑1 (MQ=255) | TCCCGCCAGGGATCGCCATTAATGATGCCGCCAGCAGATATTCCACAGGCACGCCCAGTGCGGCGTAACCAATCATTGTCGAACCAGCAATCGAGGCCATGCCACTACAAATCGCTGTAAATAATTCATTGCGATTCAGACGAT > NZ_CP009273/2246985‑2247128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |