| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,884,026 | T→C | D411G (GAC→GGC) | cysJ ← | NADPH‑dependent assimilatory sulfite reductase flavoprotein subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,884,026 | 0 | T | C | 100.0% | 65.5 / NA | 19 | D411G (GAC→GGC) | cysJ | NADPH‑dependent assimilatory sulfite reductase flavoprotein subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (8/11); total (8/11) | |||||||||||
CCGGGGTTTCTGGATTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGTCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGGCGCAGCAGATTAATTAGCGCTTCGGCATCAAGCTGTGCCGGG > NZ_CP009273/2883895‑2884157 | ccGGGGTTTCTGGATTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACg < 1:219794/139‑1 (MQ=255) cGGGGTTTCTGGATTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACg > 2:218354/1‑138 (MQ=255) aTTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACg > 2:557893/1‑139 (MQ=255) aTTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTCCCACGCGGTCAGCGAGGAAGCTGGAGGCACCCCCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACg < 2:15958/139‑1 (MQ=255) tggctggcAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGt > 1:274774/1‑139 (MQ=255) tggctggcAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGt > 1:459946/1‑139 (MQ=255) ggctggcAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGt < 2:226908/138‑1 (MQ=255) ggctggcAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGt < 1:218354/138‑1 (MQ=255) ttATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTtct < 2:104641/139‑1 (MQ=255) gTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGc > 2:290537/1‑139 (MQ=255) cgGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGTTGGAGGCACCCCCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGa < 1:340509/139‑1 (MQ=255) cgGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCCCCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGa < 1:548951/139‑1 (MQ=255) cgGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGa < 1:529725/139‑1 (MQ=255) gACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATg < 1:340734/139‑1 (MQ=255) gTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGcac > 2:266399/1‑60 (MQ=255) gTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGcac < 1:266399/60‑1 (MQ=255) aGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGGCgcag > 2:7862/1‑137 (MQ=255) ccACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGGCGCAGCAGATTAATTAGCGCTTCGGCATCAAGCTGTGCCggg < 2:287860/137‑1 (MQ=255) ccACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGGCGCAGCAGATTAATTAGCGCTTCGGCATCAAGCTGTGCCggg > 2:8761/1‑137 (MQ=255) | CCGGGGTTTCTGGATTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGTCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGGCGCAGCAGATTAATTAGCGCTTCGGCATCAAGCTGTGCCGGG > NZ_CP009273/2883895‑2884157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |