| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,464,092 | (C)6→5 | coding (152/594 nt) | bdcR → | TetR/AcrR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,464,087 | 0 | C | . | 100.0% | 188.0 / NA | 43 | coding (147/594 nt) | bdcR | TetR/AcrR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (23/20); total (23/20) | |||||||||||
AAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAACCCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAGGCGAGTGCCTGG > NZ_CP009273/4463952‑4464220 | aaaaCAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAAcccc < 1:456318/139‑1 (MQ=255) tctcGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCct > 2:283309/1‑139 (MQ=255) tctcGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCct > 1:259189/1‑139 (MQ=255) cgTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTAcg < 1:283309/139‑1 (MQ=255) cgTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTAcg > 2:694725/1‑139 (MQ=255) cgTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTAcg < 1:36428/139‑1 (MQ=255) gtcgtcCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCtttt > 1:391615/1‑139 (MQ=255) cccAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAg > 2:328180/1‑139 (MQ=255) cccAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAg > 2:149480/1‑139 (MQ=255) cccAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAg > 2:484990/1‑139 (MQ=255) aCGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAg < 2:251480/139‑1 (MQ=255) ttCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTgg > 2:144681/1‑139 (MQ=255) tCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTggg > 2:556342/1‑139 (MQ=255) cGCTCCTGGGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTggg < 2:292094/138‑1 (MQ=255) cGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTggg < 2:492219/138‑1 (MQ=255) cGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTggg < 2:770110/138‑1 (MQ=255) cGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTggg < 1:647119/138‑1 (MQ=255) aGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTa < 2:517250/137‑1 (MQ=255) gCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGcc < 1:396565/139‑1 (MQ=255) gCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTg > 1:611030/1‑123 (MQ=255) gCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTg < 2:611030/123‑1 (MQ=255) gCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCgtg > 1:246285/1‑138 (MQ=255) cGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCa < 2:233018/134‑1 (MQ=255) cGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCa > 1:233018/1‑134 (MQ=255) aaaGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGt < 2:567180/139‑1 (MQ=255) cTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCGCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTAc < 1:370793/139‑1 (MQ=255) ttCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGa < 2:59841/138‑1 (MQ=255) atgatgTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCg > 2:634494/1‑93 (MQ=255) aggCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCg < 1:634494/91‑1 (MQ=255) tGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGcc > 2:148407/1‑88 (MQ=255) tGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGcc < 1:148407/88‑1 (MQ=255) gTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCa > 2:546726/1‑81 (MQ=255) gTTACTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCa < 1:546726/81‑1 (MQ=255) aCTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCgg > 1:624245/1‑138 (MQ=255) cTGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCgg > 1:568176/1‑137 (MQ=255) tGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCa > 1:621353/1‑76 (MQ=255) tGATTATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCa < 2:621353/76‑1 (MQ=255) tATCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAGGc > 2:170295/1‑137 (MQ=255) aTCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAg < 2:345232/47‑1 (MQ=255) aTCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAg > 1:345232/1‑47 (MQ=255) tCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCgtg < 2:345989/64‑1 (MQ=255) tCTTGGTATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCgtg > 1:345989/1‑64 (MQ=255) tATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAGGCGAGTGCCTgg > 1:402584/1‑139 (MQ=255) tATTAA‑CCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAGGCGAGTGCCTgg > 1:181912/1‑139 (MQ=255) | AAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAACCCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAGGCGAGTGCCTGG > NZ_CP009273/4463952‑4464220 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |