| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,724,312 | T→G | noncoding (205/1542 nt) | BW25113_RS13535 ← | 16S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,724,312 | 0 | T | G | 100.0% | 112.5 / NA | 40 | noncoding (205/1542 nt) | BW25113_RS13535 | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (21/19); total (21/19) | |||||||||||
TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTG > NZ_CP009273/2724179‑2724437 | tCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGccccc > 2:603805/1‑139 (MQ=17) aCCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCttt < 2:113349/139‑1 (MQ=17) gtCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCt > 1:67652/1‑139 (MQ=17) ttCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACa > 2:321641/1‑139 (MQ=18) gtgtGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATg < 2:501856/139‑1 (MQ=21) gtgtGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATg < 1:724072/139‑1 (MQ=21) tgtgGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGc > 1:71164/1‑139 (MQ=21) tgGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCgg > 1:396485/1‑139 (MQ=21) gCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTAt > 2:395570/1‑133 (MQ=21) gCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTAt < 1:395570/133‑1 (MQ=21) gCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGt < 1:434274/138‑1 (MQ=21) gCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGt < 2:67652/138‑1 (MQ=21) gggATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCGTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTAt < 2:396485/138‑1 (MQ=21) gtcgCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTc > 2:267417/1‑139 (MQ=21) tcgCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTg > 1:404423/1‑92 (MQ=18) tcgCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTg < 2:404423/92‑1 (MQ=18) tcgCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTc > 2:653959/1‑138 (MQ=21) tcgCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTc > 1:649004/1‑138 (MQ=21) tcgCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTc > 2:162422/1‑138 (MQ=21) tcgCCTTGGGGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGGAGTTATCCCCCTc > 1:218086/1‑138 (MQ=255) aGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCt > 2:364838/1‑139 (MQ=37) ccGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTc < 2:359479/139‑1 (MQ=37) ttACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTAcc > 2:259278/1‑100 (MQ=37) ttACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTAcc < 1:259278/100‑1 (MQ=37) ttACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTcc > 2:469785/1‑137 (MQ=37) aGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCg < 1:728035/74‑1 (MQ=21) aGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCg > 2:728035/1‑74 (MQ=21) aTCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCACCAGGCAGCTTACCAGACATTACTCACCCGTc < 2:218086/137‑1 (MQ=255) tCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTa > 2:214618/1‑121 (MQ=25) tCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTc < 2:421473/131‑1 (MQ=21) tCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTc > 1:421473/1‑131 (MQ=21) tCTGGGCACATCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAATAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTa < 1:214618/121‑1 (MQ=25) ggCACATCCGATGGCAAGAGGCCCGTAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTc < 1:69570/135‑1 (MQ=21) acaTCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCg < 2:569563/139‑1 (MQ=25) aTCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCg > 2:85256/1‑137 (MQ=25) tCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTAcc > 1:759455/1‑65 (MQ=255) tCCGATGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTAcc < 2:759455/65‑1 (MQ=255) aTGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACa > 2:527472/1‑104 (MQ=25) aTGGCAAGAGGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACa < 1:527472/104‑1 (MQ=25) agagGCCCGAAGGGCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgctg < 1:653959/139‑1 (MQ=37) | TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTG > NZ_CP009273/2724179‑2724437 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |