Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP009273 | 1,948,189 | T→G | V164G (GTG→GGG) | cmoB → | tRNA 5‑methoxyuridine(34)/uridine 5‑oxyacetic acid(34) synthase CmoB |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 1,948,189 | 0 | T | G | 100.0% | 161.6 / NA | 44 | V164G (GTG→GGG) | cmoB | tRNA 5‑methoxyuridine(34)/uridine 5‑oxyacetic acid(34) synthase CmoB |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (21/23); total (21/23) |
TTTAACCGGACGCACCATTCTGGATGTCGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGTGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTGCTTTACCATCGCCGTTCACCGCTGGA > NZ_CP009273/1948058‑1948318 | tttAACCGGACGCACCATTCTGGATGTCGGCTGCGGCAGCGTTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTaaa < 2:771403/139‑1 (MQ=255) aCCGGACGCACCATTCTGGATGTCGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAacta < 2:664243/138‑1 (MQ=255) ccGGACGCTCCATTCTGGATGTCGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAactact < 1:514188/139‑1 (MQ=255) aCGCACCATTCTGGATGTCGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAacta > 1:403899/1‑133 (MQ=255) aCGCACCATTCTGGATGTCGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAacta < 2:403899/133‑1 (MQ=255) gATGTCGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAgcgcg > 1:505774/1‑139 (MQ=255) aTGTCGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAacta < 2:242802/119‑1 (MQ=255) aTGTCGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAacta > 1:242802/1‑119 (MQ=255) cGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGCTCAGCGCGCGCAt > 1:61145/1‑139 (MQ=255) cGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCAt > 1:605212/1‑139 (MQ=255) cGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCAt > 2:54070/1‑139 (MQ=255) gCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGt > 2:107941/1‑138 (MQ=255) cGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGt < 2:398306/137‑1 (MQ=255) aTCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTa < 2:631928/138‑1 (MQ=255) gtgGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTa > 1:278605/1‑121 (MQ=255) gtgGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTa < 2:278605/121‑1 (MQ=255) gtgGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGtt < 1:369414/126‑1 (MQ=255) gtgGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGtt > 2:369414/1‑126 (MQ=255) tgGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGt < 1:564714/118‑1 (MQ=255) tgGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGt > 2:564714/1‑118 (MQ=255) cATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAactact < 1:756560/87‑1 (MQ=255) cATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAactact > 2:756560/1‑87 (MQ=255) aTGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCgg < 1:107941/139‑1 (MQ=255) tGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTa > 1:362134/1‑78 (MQ=255) tGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTa < 2:362134/78‑1 (MQ=255) tGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCgg > 2:301724/1‑138 (MQ=255) aTTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCAc > 2:132122/1‑139 (MQ=255) cACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATa > 1:730738/1‑139 (MQ=255) gggATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCg < 1:132122/138‑1 (MQ=255) gggATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCg < 2:605212/138‑1 (MQ=255) tCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATggg < 2:36578/139‑1 (MQ=255) tCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATggg < 1:86397/139‑1 (MQ=255) gACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCg < 2:160471/139‑1 (MQ=255) cccTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTg > 2:396023/1‑139 (MQ=255) cTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGa > 2:153685/1‑105 (MQ=255) cTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGa < 1:153685/105‑1 (MQ=255) aCTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTGCTTTACCAt < 2:173833/139‑1 (MQ=255) cTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTGCTTTACCATc > 1:222801/1‑139 (MQ=255) cTGTTTCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTGCTTTACCATc > 2:767004/1‑139 (MQ=255) tttCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGtt > 1:208053/1‑68 (MQ=255) tttCTGTGCCAGTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGtt < 2:208053/68‑1 (MQ=255) gTTTGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTGCTTTACCATCGCCGTTCACCGCTg > 1:180575/1‑139 (MQ=255) tGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTGCTTTACCATCGCCGTTCACCGCTGGa < 1:402303/138‑1 (MQ=255) tGAAGCGGGGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTGCTTTACCATCGCCGTTCACCGCTGGa < 1:54070/138‑1 (MQ=255) | TTTAACCGGACGCACCATTCTGGATGTCGGCTGCGGCAGCGGTTATCACATGTGGCGCATGATTGGCGCAGGCGCGCACCTCGCGGTGGGGATCGACCCTACGCAACTGTTTCTGTGCCAGTTTGAAGCGGTGCGTAAACTACTGGGTAATGATCAGCGCGCGCATTTGTTACCGTTAGGTATTGAACAACTTCCGGCACTGAAAGCCTTTGATACCGTCTTTTCGATGGGCGTGCTTTACCATCGCCGTTCACCGCTGGA > NZ_CP009273/1948058‑1948318 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |