| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,154,426 | A→G | I854V (ATC→GTC) | mdtC → | multidrug efflux RND transporter permease subunit MdtC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,154,426 | 0 | A | G | 100.0% | 102.1 / NA | 28 | I854V (ATC→GTC) | mdtC | multidrug efflux RND transporter permease subunit MdtC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (11/17); total (11/17) | |||||||||||
AAATCGCTCTCGGACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGATCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGTTGGCGCTGGAG > NZ_CP009273/2154300‑2154554 | aaaTCGCTCTCGGACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATcg < 2:757590/139‑1 (MQ=255) gCTCTCGGACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATcgccgc < 1:197434/138‑1 (MQ=255) gCTCTCGGACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATcgccgc > 2:343844/1‑138 (MQ=255) ggACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCg < 1:16459/137‑1 (MQ=255) ggACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc < 1:255751/139‑1 (MQ=255) gACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCa < 1:448979/139‑1 (MQ=255) aCGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCAc < 2:522642/139‑1 (MQ=255) aCGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCAc < 1:579279/139‑1 (MQ=255) gcggcgATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGAGGTCCTGATTATCGCCGCCATCGCCACGGTGtata > 2:223877/1‑139 (MQ=255) cgatcgatCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGt < 2:666454/139‑1 (MQ=255) gatcgCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTgg > 2:80869/1‑139 (MQ=255) cccAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACga < 1:395402/139‑1 (MQ=255) cTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGt > 2:548597/1‑138 (MQ=255) gTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGa < 1:223877/139‑1 (MQ=255) tGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACg > 1:611209/1‑86 (MQ=255) tGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACg < 2:611209/86‑1 (MQ=255) ttttGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCAc < 2:211662/75‑1 (MQ=255) ttttGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCAc > 1:211662/1‑75 (MQ=255) cGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTcggc < 1:409134/139‑1 (MQ=255) ttCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc < 1:640056/51‑1 (MQ=255) ttCCAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGcc > 2:640056/1‑51 (MQ=255) ccAGGAGACGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAgcg > 1:197607/1‑139 (MQ=255) gaCGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGTTg > 1:728128/1‑139 (MQ=255) cGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAgcg > 2:371515/1‑131 (MQ=255) cGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAgcg < 1:371515/131‑1 (MQ=255) cGATGAACTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGTTGgc > 1:272726/1‑139 (MQ=255) cTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGTTGGCGCTGGAg < 1:291133/139‑1 (MQ=255) cTCGCAGGTGGTCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGTTGGCGCTGGAg < 2:728128/139‑1 (MQ=255) | AAATCGCTCTCGGACGCCAGTGCGGCGATCGATCGCGCAATGACCCAGCTTGGTGTGCCTTCGACGGTGCGCGGCAGTTTTGCCGGCACGGCGCAGGTGTTCCAGGAGACGATGAACTCGCAGGTGATCCTGATTATCGCCGCCATCGCCACGGTGTATATCGTGCTGGGTATCCTTTACGAGAGTTACGTACATCCGCTGACGATTCTCTCCACCCTGCCCTCGGCGGGCGTTGGAGCGCTGTTGGCGCTGGAG > NZ_CP009273/2154300‑2154554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |