| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,444,948 | A→C | V39G (GTG→GGG) | yfcR ← | fimbrial protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,444,948 | 0 | A | C | 100.0% | 111.7 / NA | 31 | V39G (GTG→GGG) | yfcR | fimbrial protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (17/14); total (17/14) | |||||||||||
TGTGCAGTTCAACGTGTATTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACACGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTCATCAGCCTTTGCGGCT > NZ_CP009273/2444824‑2445077 | tgtgCAGTTCAACGTGTATTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTaaa > 2:518169/1‑139 (MQ=255) aGTTCAACGTGTATTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCAc < 1:325319/139‑1 (MQ=255) gTTCAACGTGTATTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCcgcg > 1:518439/1‑123 (MQ=255) gTTCAACGTGTATTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCcgcg < 2:518439/123‑1 (MQ=255) aaCGTGTATTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGtt < 2:602908/139‑1 (MQ=255) aaCGTGTATTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGtt < 2:505513/139‑1 (MQ=255) cGTGTATTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTta > 2:190227/1‑139 (MQ=255) tATTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTtacta < 1:518169/138‑1 (MQ=255) tATTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTtacta < 2:276395/138‑1 (MQ=255) aTTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCgcgc > 1:303795/1‑113 (MQ=255) aTTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCgcgc < 2:303795/113‑1 (MQ=255) aTTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTtactac > 2:290333/1‑138 (MQ=255) gTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAg < 1:60432/138‑1 (MQ=255) aaCGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCa < 1:104304/138‑1 (MQ=255) tatTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGcc < 1:304451/139‑1 (MQ=255) tatTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGcc < 2:132406/139‑1 (MQ=255) ccGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCa > 1:170695/1‑73 (MQ=255) ccGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCa < 2:170695/73‑1 (MQ=255) ctctACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAAc > 1:503118/1‑139 (MQ=255) cTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACGCTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCa > 1:181935/1‑139 (MQ=255) tGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCa > 2:74880/1‑138 (MQ=255) cccTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATaa < 2:240277/83‑1 (MQ=255) cccTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATaa > 1:240277/1‑83 (MQ=255) cccTTGATTGAACAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATaa > 1:631851/1‑139 (MQ=255) aaCAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGt > 1:305259/1‑139 (MQ=255) aaCAGGGTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGt > 2:95024/1‑139 (MQ=255) ggTGGCGGAGCATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGtcat > 2:50154/1‑137 (MQ=255) cATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGAt < 1:491637/56‑1 (MQ=255) cATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGAt > 2:491637/1‑56 (MQ=255) cATCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTCATCAGCCTTTGCgg > 1:38415/1‑139 (MQ=255) tCGACCAACCCGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTCATCAGCCTTTGCGgct > 2:621003/1‑139 (MQ=255) | TGTGCAGTTCAACGTGTATTTCGCATCTTGCCGATAATTGGTGCCATCAACGTTATCAGCAATCATATTGCCGAACTCTACCTGGCTGCCCTTGATTGAACAGGGTGGCGGAGCATCGACCAACACGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTCATCAGCCTTTGCGGCT > NZ_CP009273/2444824‑2445077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |