| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,884,026 | T→C | D411G (GAC→GGC) | cysJ ← | NADPH‑dependent assimilatory sulfite reductase flavoprotein subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,884,026 | 0 | T | C | 100.0% | 66.1 / NA | 20 | D411G (GAC→GGC) | cysJ | NADPH‑dependent assimilatory sulfite reductase flavoprotein subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (8/12); total (8/12) | |||||||||||
CCGGGGTTTCTGGATTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGTCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGGCGCAGCAGATTAATTAGCGCTTCGGCATCAAGCTGTGCCGGG > NZ_CP009273/2883895‑2884157 | ccGGGGTTTCTGGATTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACg < 2:513949/139‑1 (MQ=255) cGGGGTTTCTGGATTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACg > 2:36899/1‑138 (MQ=255) gggTTACTGGTTTGGCTGGCAGGCGGAAGTTAGCGTTATGTCCGAGAAATACGCGGTCTTCGCCCCCGTCTCCCACGCGTTCAGCGAGGAAGCTGGAGGCACCCCCGGCGCGGGCTGGGCCTGCCACGCCGTAACGcac < 2:273803/139‑1 (MQ=255) tCTGGATTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGTGGACTTCGCCCTCTTCTTACACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGCAACGcaccacac > 1:273803/1‑139 (MQ=255) gATTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCaa < 2:146322/138‑1 (MQ=255) aTTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACg < 1:541461/139‑1 (MQ=255) gTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGt > 1:460156/1‑112 (MQ=255) gTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGt < 2:460156/112‑1 (MQ=255) aaaTACGCGGACTTCGCCCTCTTCTTCCACGCTGTCGGCGAGAAAGCTGGAGGCACCACCGGCAGGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCgag < 1:160638/139‑1 (MQ=255) cgGACTTCGCCCTCGTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGa < 1:442504/139‑1 (MQ=255) cTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATgg > 2:213366/1‑138 (MQ=255) cttcttCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGAcg > 1:402134/1‑139 (MQ=255) cttcttCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGAcg > 2:405582/1‑139 (MQ=255) cgcgGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAg > 1:318793/1‑139 (MQ=255) gggAGGAAGCGGGAGGCACACCCGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGGCgca < 2:321518/137‑1 (MQ=255) cccccGGCACGGGCGCGGCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGGCGCAGCAGATTAATTAGCGCtt < 1:249568/136‑1 (MQ=255) ggCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGGCGCAGCAGATTAATTAGCGCTTCGGCATCAAGCTGTGc < 2:318793/139‑1 (MQ=255) gCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGgcgc < 1:346193/103‑1 (MQ=255) gCCTTCCACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGgcgc > 2:346193/1‑103 (MQ=255) ccACGCCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGGCGCAGCAGATTAATTAGCGCTTCGGCATCAAGCTGTGCCggg < 1:405582/137‑1 (MQ=255) | CCGGGGTTTCTGGATTGGCTGGCAGGCGGAAGTTATCGTTATGTTCGATAAATACGCGGACTTCGCCCTCTTCTTCCACGCGGTCAGCGAGGAAGCTGGAGGCACCACCGGCACGGGCGCGGCCTTCCACGTCGTAACGCACCACACCAACGGTGACGTGTACTTCGTTCTCGACTTCCGCCTGCGAGGAGGCGATGGAATACAGACGCGGCGTCAGCGGGCGCAGCAGATTAATTAGCGCTTCGGCATCAAGCTGTGCCGGG > NZ_CP009273/2883895‑2884157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |