| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 420,401 | A→G | intergenic (‑27/‑66) | acpH ← / → queA | ACP phosphodiesterase/tRNA preQ1(34) S‑adenosylmethionine ribosyltransferase‑isomerase QueA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 420,401 | 0 | A | G | 100.0% | 52.9 / NA | 17 | intergenic (‑27/‑66) | acpH/queA | ACP phosphodiesterase/tRNA preQ1(34) S‑adenosylmethionine ribosyltransferase‑isomerase QueA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (7/10); total (7/10) | |||||||||||
GGCGGAAAACTTTCTTCAGGATTTCCGCGTACGAAATCAGCCAGTAAATTGCCGGAAAGCGAGCTTTCCGCGAGATGGGCTAAATGCAGGTGAGCTAAAAAATTCATCGATTATATTCTATCCAAAAGGGGGTAAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTCTGAGTCAGTGTCATGCGCGTTACCGATTTCTCCTTTGAATTGCCCGAATCCCTGATTGCCCACTATCCCATG > NZ_CP009273/420268‑420526 | ggCGGAAAACTTTCTTCAGGATTTCCGCGTACGAAATCAGCCAGTAAATTGCCGGAAAGCGAGCTTTCCGCGAGATGGGCTAAATGCAGGTGAGCTAAAAAATTCATCGATTATATTCTATCCAAAAGGGGGTGAAGGt > 2:617731/1‑139 (MQ=255) tcttcAGGATTTCCGCGTACGAAATCAGCCAGTAAATTGCCGGAAAGCGAGCTTTCCGCGAGATGGGCTAAATGCAGGTGAGCTAAAAAATTCATCGATTATATTCTATCCAAAAGGGGGTGAAGGTTGCAGGGagag < 2:256121/138‑1 (MQ=255) cGAAATCAGCCAGTAAATTGCCGGAAAGCGAGCTTTCCGCGAGATGGGCTAAATGCAGGTGAGCTAAAAAATTCATCGATTATATTCTATCCAAAAGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTAcc < 2:193893/139‑1 (MQ=255) aTTGCCGGAAAGCGAGTTTTCCGCGAGATGGGCTAAATGCAGGTGAGCTAAAAAATTCATCGATTATATTCTATCCAAAAGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGt < 2:244810/139‑1 (MQ=255) ttGCCGGAAAGCGAGCTTTCCGCGAGATGGGCTAAATGCAGGTGAGCTAAAAAATTCATCGATTATATTCTATCCAAAAGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTc < 2:287420/139‑1 (MQ=255) ggTGAGCTAAAAAATTCATCGATTATATTCTATCCAAAAGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTCTGAGt > 2:149819/1‑104 (MQ=255) ggTGAGCTAAAAAATTCATCGATTATATTCTATCCAAAAGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTCTGAGt < 1:149819/104‑1 (MQ=255) aGCTAAAAAATTCATCGATTATATTCTATCCAAAAGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTc > 1:337816/1‑95 (MQ=255) aGCTAAAAAATTAATCGATTATATTCTATCCAAAAGGGGGTGAAGGTTGAAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTc < 2:337816/95‑1 (MQ=255) cTAAAAAATTCATCGATTATATTCTATCCAAAAGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTCTGAGTCAGTGTCATGCGCGTTACCGATTTCTCCTTTGAATTGccc > 2:602867/1‑138 (MQ=255) atatTCTATCCAAAAGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTCTGAGTCAGTGTCATGCGCGTTACCGATTTCTCCTTTGAATTGCCCGAATCCCTGATTGCCCAc < 1:560799/138‑1 (MQ=255) atatTCTATCCAAAAGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTCTGAGTCAGTGTCATGCGCGTTACCGATTTCTCCTTTGAATTGCCCGAATCCCTGATTGCCCAc < 1:617731/138‑1 (MQ=255) tCCAAAAGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCctc < 2:269040/56‑1 (MQ=255) tCCAAAAGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCctc > 1:269040/1‑56 (MQ=255) tCCAAAAGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTCTGAGTCAGTGTCATGCGCGTTACCGATTTCTCCTTTGAATTGCCCGAATCCCTGATTGCCCACTATCCCATg > 1:364385/1‑139 (MQ=255) aaGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTCTGAGTCAGTGTCATGCGCGTTACCGATTTCTCCTTTGAATTGCCCGAATCCCTGATTGCCCAc > 1:588701/1‑125 (MQ=255) aaGGGGGTGAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTCTGAGTCAGTGTCATGCGCGTTACCGATTTCTCCTTTGAATTGCCCGAATCCCTGATTGCCCAc < 2:588701/125‑1 (MQ=255) | GGCGGAAAACTTTCTTCAGGATTTCCGCGTACGAAATCAGCCAGTAAATTGCCGGAAAGCGAGCTTTCCGCGAGATGGGCTAAATGCAGGTGAGCTAAAAAATTCATCGATTATATTCTATCCAAAAGGGGGTAAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGTCTGAGTCAGTGTCATGCGCGTTACCGATTTCTCCTTTGAATTGCCCGAATCCCTGATTGCCCACTATCCCATG > NZ_CP009273/420268‑420526 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |