| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,268,272 | A→C | T104P (ACC→CCC) | chaC → | glutathione‑specific gamma‑glutamylcyclotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,268,272 | 0 | A | C | 100.0% | 75.1 / NA | 22 | T104P (ACC→CCC) | chaC | glutathione‑specific gamma‑glutamylcyclotransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (9/13); total (9/13) | |||||||||||
CGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCATCGCGCATTTTGCCTGCGCCTGACCGCCGGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTTGATGATGGACGCA > NZ_CP009273/1268138‑1268401 | cGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCATCGCGCATTTTGCCTGCGCCTGACCGCCGGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGcccca < 2:375233/138‑1 (MQ=255) cGAATCGTGCACCGGTACACTGGTTGGATGGCATCGCGCATTTTGCCTGCGCCTGACCGCCGGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGa > 1:469790/1‑139 (MQ=255) cacTGGTTGGATGGCATCGCGCATTTTGCCTGCGCCTGACCGCCGGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGc < 1:219071/138‑1 (MQ=255) cacTGGTTGGATGGCATCGCGCATTTTGCCTGCGCCTGACCGCCGGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCt > 2:159542/1‑139 (MQ=255) gTTGGATGGCATCGCGCATTTTGCCTGCGCCTGACCGCCGGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGa > 1:145750/1‑117 (MQ=255) gTTGGATGGCATCGCGCATTTTGCCTGCGCCTGACCGCCGGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGa < 2:145750/117‑1 (MQ=255) gTTGGATGGCATCGCGCATTTTGCCTGCGCCTGACCGCCGGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAg > 2:366355/1‑138 (MQ=255) ttGGATGGCATCGCGCATTTTGCCTGCGCCTGACCGCCGGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCa < 1:15349/139‑1 (MQ=255) aTCGCGCATTTTGCCTGCGCCTGACCGCCGGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAAc > 2:374517/1‑139 (MQ=255) gcCTGACCGCCGGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCgaga < 2:546718/139‑1 (MQ=255) ccgccgGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgatgat < 2:469790/139‑1 (MQ=255) ggACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTa < 1:226776/139‑1 (MQ=255) cGGATGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGc < 1:366355/139‑1 (MQ=255) aTGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCga > 2:119897/1‑96 (MQ=255) aTGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCga < 1:119897/96‑1 (MQ=255) aTGCTTGCACTGAAAGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGctt > 1:476735/1‑138 (MQ=255) aaaGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCt < 1:136390/53‑1 (MQ=255) aaaGAGGGCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCt > 2:136390/1‑53 (MQ=255) ggCTGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTTGATGATGGACGca < 2:414341/139‑1 (MQ=255) ggCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTTGATGATGGACGca < 1:374517/139‑1 (MQ=255) ggCGGACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTTGATGATGGACGca < 2:97335/139‑1 (MQ=255) gACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTg < 2:372151/98‑1 (MQ=255) gACGCCCCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTg > 1:372151/1‑98 (MQ=255) | CGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCATCGCGCATTTTGCCTGCGCCTGACCGCCGGGCGCGGGACTGCGCACCAGCCGGGACGGATGCTTGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTTGATGATGGACGCA > NZ_CP009273/1268138‑1268401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |