| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,211,818 | A→C | C73W (TGT→TGG) | yehY ← | glycine betaine ABC transporter permease YehY |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,211,818 | 0 | A | C | 100.0% | 111.8 / NA | 29 | C73W (TGT→TGG) | yehY | glycine betaine ABC transporter permease YehY |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (13/16); total (13/16) | |||||||||||
CAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCACAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCGGCCACAGCTGCCAGAGATGACGCCCCTCACCCGAAACTAAACGATTAGG > NZ_CP009273/2211691‑2211949 | cagccagcCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGcc > 2:574151/1‑139 (MQ=255) ccagAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTa > 1:245981/1‑139 (MQ=255) aaaCCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCgg > 1:245717/1‑139 (MQ=255) cGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACa < 1:538250/139‑1 (MQ=255) tGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGcaaccaac > 2:12584/1‑139 (MQ=255) tGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGcaaccaac > 1:569496/1‑139 (MQ=255) cATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGcc < 2:32486/139‑1 (MQ=255) ccTTTCCAGCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCgg < 2:517267/139‑1 (MQ=255) cAGCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCGGCcaca < 1:539443/138‑1 (MQ=255) gCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTAcc > 2:74417/1‑68 (MQ=255) gCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTAcc < 1:74417/68‑1 (MQ=255) cccACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCGGCCACAGCTGcc < 1:574151/138‑1 (MQ=255) cAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCGGCCACAGCTGCCAGAGATGa < 2:206520/139‑1 (MQ=255) cAATACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCGGCCACAGCTGCCAGAGATGACGc > 1:371651/1‑139 (MQ=255) aTACGAAGACGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCGGCCACAGCTGCCAGAGATGACGccc < 2:17487/139‑1 (MQ=255) aCGAATTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCGGCCACAGCTGCCAGAGATGACGCCCCTCAccc > 1:154311/1‑138 (MQ=255) aTTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCGGCCACAGCTGCCAGAGATGACGcccc < 2:410146/128‑1 (MQ=255) aTTGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCGGCCACAGCTGCCAGAGATGACGcccc > 1:410146/1‑128 (MQ=255) ttGCGCCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCGGCCACAGCTGCCAGAGATGACGCCCCTCACCCGAAACt < 2:154311/139‑1 (MQ=255) cgcCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAg < 1:611501/81‑1 (MQ=255) cgcCAGAATGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAg > 2:611501/1‑81 (MQ=255) gAATGAGGGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCGCCAGCATCCAGAGCGTTTGCGGCCACAGCTGCCAGAGAGGACGCCCCTCACCCGAAACTAAACGAtt < 2:370654/139‑1 (MQ=255) aaTGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACa > 1:4485/1‑42 (MQ=255) aaTGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACa < 2:4485/42‑1 (MQ=255) tGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGcaacca < 1:418692/62‑1 (MQ=255) tGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGcaacca > 2:418692/1‑62 (MQ=255) tGAGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCGGCCACAGCTGCCAGAGATGACGCCCCTCACCCGAAACTAAACGATTAgg < 1:537288/139‑1 (MQ=255) aGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCccac > 1:49493/1‑68 (MQ=255) aGTGCCCAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCccac < 2:49493/68‑1 (MQ=255) | CAGCCAGCCAGAAACCACTGCCGAGGCTGGTACGCGCCAGCGCACTGCCATTTTGCGCCAGTTGGGTCGCCGCCTTTCCAGCTCCCCACACCAGCAATACGAAGACGAATTGCGCCAGAATGAGTGCACAAATGCTGCCTTTTTTACCGGGAATAAAACAGGCCGTCAGCCAGGCGCAACCAACGCCCACCAGCATCCAGATCGTTTGCGGCCACAGCTGCCAGAGATGACGCCCCTCACCCGAAACTAAACGATTAGG > NZ_CP009273/2211691‑2211949 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |