New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =31 (2.020)40 (2.610) 31/258 0.0 56.3% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 NA (NA)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein

GTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCC  >  NZ_CP009273/359970‑360241
                                                                                                                                      |                                                                                                                                          
ttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTc                                                                                                                                        <  2:12580‑M1/5‑1 (MQ=255)
 ttCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTcc                                                                                                                                       <  1:233756/139‑1 (MQ=255)
 tgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTcc                                                                                                                                       <  2:6033‑M1/6‑1 (MQ=255)
  tcaatcaaCTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCt                                                                                                                                      >  2:166941/1‑139 (MQ=255)
                aCCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg                                                                                                                        >  2:142666/1‑139 (MQ=255)
                     gtgGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCTCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggagg                                                                                                                   >  2:156600/1‑136 (MQ=255)
                     gtgGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcgg                                                                                                                   >  1:158360/1‑138 (MQ=255)
                     cgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgggcg                                                                                                                    >  1:142336‑M1/114‑138 (MQ=255)
                       ggAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcggcacctc                                                                                                                 >  2:134547/1‑133 (MQ=255)
                          gCGACACCCGGACGCACTCCACCGCTTGCCAGCGGCTTCCTCTCCACCGCCACAATCCAGTCCAGGATCTCCGGTGATATGCTGTCAAACATGAAACTCCCGATCCCCATTTCCTGGCATTTTATGCCGGCCGTCCCGc                                                                                                              <  2:27682/139‑1 (MQ=255)
                           cggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGcc                                                                                                             >  2:118039‑M1/108‑139 (MQ=255)
                           cGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGAGGGCGTCCTGcc                                                                                                             >  1:269521/1‑139 (MQ=255)
                             gcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCg                                                                                                           >  1:109284‑M1/106‑139 (MQ=255)
                               aTCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGcc                                                                                                         <  2:269521/139‑1 (MQ=255)
                                gatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCa                                                                                                        >  1:244755‑M1/103‑139 (MQ=255)
                                 atttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGTCCGcc                                                                                                         <  2:108864‑M1/36‑1 (MQ=255)
                                 atttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGcc                                                                                                         >  1:108864‑M1/102‑137 (MQ=255)
                                      tcctactcaggagagcgttccccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTc                                                                                                   >  2:57794‑M1/97‑138 (MQ=255)
                                        cACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCCGCcccccccccccccg                                                                                                >  1:57794/1‑137 (MQ=255)
                                          cTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGGCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGc                                                                                              <  2:48890/139‑1 (MQ=255)
                                           ttCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCCCGGcc                                                                                             >  1:55075/1‑139 (MQ=255)
                                            tCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCAcccccccgcccc                                                                                            >  1:199633/1‑133 (MQ=255)
                                               ggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTg                                                                                         >  1:154700‑M1/88‑139 (MQ=255)
                                                gagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgg                                                                                                                       >  1:186796‑M1/87‑108 (MQ=255)
                                                gagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgg                                                                                                                       <  2:186796‑M1/22‑1 (MQ=255)
                                                   agcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGGGTCCTTCCCGCCACCCTCCCGGCCGgtgcctc                                                                                     <  1:142669‑M1/56‑4 (MQ=255)
                                                   agcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTTCTCGCCGCCACCCCCCCTGCcgttgtgtt                                                                                     <  2:250853‑M1/56‑5 (MQ=255)
                                                     cgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTGCTTCCCCCTCCCCTCCggggcgttactgtg                                                                                    <  1:123370‑M1/57‑7 (MQ=255)
                                                     cgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCt                                                                                                                >  2:100218‑M1/82‑110 (MQ=255)
                                                     cgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCt                                                                                                                <  1:100218‑M1/29‑1 (MQ=255)
                                                     cgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCCGGGCGGTGCTTCg                                                                                    <  1:126457‑M1/57‑1 (MQ=255)
                                                      gttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCa                                                                                 >  1:225092‑M1/81‑139 (MQ=255)
                                                      ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCa                                                                                 <  2:126531/139‑1 (MQ=255)
                                                        tcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTgg                                                                                                                                    >  1:28513‑M1/79‑87 (MQ=255)
                                                        tcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTgg                                                                                                                                    <  2:28513‑M1/9‑1 (MQ=255)
                                                             cTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTc                                                                           >  1:118039/1‑138 (MQ=255)
                                                                  acaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGtt                                                                                                                               >  2:150331‑M1/69‑82 (MQ=255)
                                                                  acaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGtt                                                                                                                               <  1:150331‑M1/14‑1 (MQ=255)
                                                                         ataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGTGGCCTTCCCTCCCCCCCCCCGGCCGTTGCTTCGACAAGGTGAAATCCGCtcccc                                                              <  2:111545‑M1/78‑2 (MQ=255)
                                                                         ataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCACCCCCCGGGGCCTTTTTTTGCAACGTTTCAAACCGcccccc                                                              <  1:233504‑M1/78‑2 (MQ=255)
                                                                          gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcgg                                                             <  1:6791/139‑1 (MQ=255)
                                                                              ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGAGTGCTGCACGCCACCCCCCCGGCCGGTGCTTCGCAACATTTAAATCCGCCCCccgcggc                                                         >  2:210373/1‑138 (MQ=25)
                                                                               cgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt                                                        >  1:204322‑M1/56‑139 (MQ=255)
                                                                                aTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCCCCCCCCCGTTGCTTTGCAAACGTCCACACCGCTCCccgcgggct                                                       >  2:275298/1‑136 (MQ=25)
                                                                                  aaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg                                                     >  1:156600‑M1/53‑139 (MQ=255)
                                                                                  aaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg                                                     >  2:80808‑M1/53‑139 (MQ=255)
                                                                                   cAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg                                                     <  1:210373/138‑1 (MQ=255)
                                                                                   cAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg                                                     <  1:199005/138‑1 (MQ=255)
                                                                                    ggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                   >  1:111545‑M1/51‑139 (MQ=255)
                                                                                    ggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                   >  1:12580‑M1/51‑139 (MQ=255)
                                                                                    ggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                   >  1:142666‑M1/51‑139 (MQ=255)
                                                                                    cgcccagtctttcgactgagcctttcgtttcattttatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                   >  1:90472‑M1/51‑139 (MQ=255)
                                                                                    aGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCCATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                   <  2:65752/139‑1 (MQ=255)
                                                                                      cccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCt                                                 >  1:219563‑M1/49‑139 (MQ=255)
                                                                                        cAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCACCCCCCGGGCCGGTGCTTTGCAAAGTTCCAAAACGCTCCCCGCGGATTTGTCCTAc                                               >  1:22342/1‑139 (MQ=21)
                                                                                         agtctttcgactgagcctttcgttttatttgatgcctggggaatta                                                                                                                                            <  2:168080‑M1/1‑1 (MQ=255)
                                                                                         agtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGTCGTCCTTCCCGCCACCCTCCGGTCCGTTGCTTTGCAACGTTCAAATCCGCCCCCCGCGGCTTTGtccttct                                              <  2:5203‑M1/94‑4 (MQ=255)
                                                                                         agtatttcgactgatcctttggttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACt                                              >  2:199633‑M1/46‑139 (MQ=255)
                                                                                           gAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCCCCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGATCCAATCCGCTCCCCGCGGGTTTGTCCTAcatc                                            >  1:252629/1‑136 (MQ=21)
                                                                                                ccGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCTCCCGGCCGGTGCTTTGCAAAGTTCAAAACCGCTCCCGGCGGATTTGTCCTACTCCGga                                         >  1:218532/1‑137 (MQ=21)
                                                                                                     gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCCCCCGGCCCGTGGTTCGCCACGTTTAAATCCGCTCCCCGCGGGTTTTTCCTACCCAGGGGAgcggt                                  <  1:19327‑M1/106‑3 (MQ=255)
                                                                                                        cctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCAc                               >  1:5203‑M1/31‑139 (MQ=255)
                                                                                                              tCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGac                           <  1:12686/137‑1 (MQ=255)
                                                                                                                 aaCATGAGAATCCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaaca                      <  2:59401/139‑1 (MQ=255)
                                                                                                                         tgccgggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCAGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACACCAGATa               >  2:70264‑M1/14‑138 (MQ=255)
                                                                                                                              cGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCCCCCGGCCGGTTCTTCACCAACCTCCAACCCGCTCCCCGCGGGCTTGCCCTACTCCTGAGAGCGTTGACCCCCCAACAACCGATaaaaag          >  2:225092/1‑136 (MQ=9)
                                                                                                                               gggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaa        >  1:7394‑M1/8‑139 (MQ=255)
                                                                                                                                aTCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCCCCCGGCCGGTGCTTTGCAACGGTCCAATCCGCCCCCCGCGGGTTTGTCCTACTCCGGAGAGCGGTCACCCCCAAACAACAGATAAAACCaa        >  1:80808/1‑138 (MQ=11)
                                                                                                                                 tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAg      <  2:133030/139‑1 (MQ=37)
                                                                                                                                     cAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc  <  1:166941/139‑1 (MQ=33)
                                                                                                                                     cAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc  <  1:127738/139‑1 (MQ=18)
                                                                                                                                      aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc  <  1:238116/138‑1 (MQ=33)
                                                                                                                                      |                                                                                                                                          
GTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCC  >  NZ_CP009273/359970‑360241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.