Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2009774	2009785	12	3 [1]	[0] 3	fliH	flagellar assembly protein FliH

CGGATGCAGCAACTGGTCAGCGAATTTCAAACTACCCTTGATGCACTTGATAGTGTGATAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCAC  >  NZ_CP009273/2009637‑2009775                                                                                                                                         |   cGGGTGCAGCAACTGGTCAGCGAATTTCAAACTACCCGTGATGCGCTTGATAGTGTGATAGCATCGCGCCTGAAGCAGGTGGCGCTAGAAGCGGCACGTCAGGTCATCGGTCATACGCCAACGGTAGATAACTCGGCAc  <  2:68020/139‑1 (MQ=255)                                                           tAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGc    >  1:139056/1‑79 (MQ=255)                                                           tAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGc    <  2:139056/79‑1 (MQ=255)                                                                                                                                         |   CGGATGCAGCAACTGGTCAGCGAATTTCAAACTACCCTTGATGCACTTGATAGTGTGATAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCAC  >  NZ_CP009273/2009637‑2009775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑