| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,393,311 | A→G | I158T (ATC→ACC) | fnr ← | fumarate/nitrate reduction transcriptional regulator Fnr |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,393,311 | 0 | A | G | 100.0% | 42.7 / NA | 12 | I158T (ATC→ACC) | fnr | fumarate/nitrate reduction transcriptional regulator Fnr |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (5/7); total (5/7) | |||||||||||
ATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGACAAATCGTCCAGCGTTTCGAACGGGATTTCACATACCATCGAG > NZ_CP009273/1393175‑1393430 | aTAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTc < 2:38289/139‑1 (MQ=255) aCCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTcc > 2:135160/1‑139 (MQ=255) gTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGAttt < 1:28304/139‑1 (MQ=255) aTCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCAc > 1:179462/1‑139 (MQ=255) gCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCa < 2:179462/139‑1 (MQ=255) aGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTAATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGTTTCGGCATTTTACCGGACAAATCGTCCAg > 2:199901/1‑139 (MQ=255) aaTGGAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCa < 1:225071/72‑1 (MQ=255) aaTGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCa > 2:225071/1‑72 (MQ=255) cTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGACAAATCGTCCAGCGTTTCGAACGGGATTTcaca < 1:135160/138‑1 (MQ=255) cGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCtcatca > 1:62061/1‑63 (MQ=255) cGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCtcatca < 2:62061/63‑1 (MQ=255) ttcttcGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGACAAATCATCCAGCGTTTCGAACGGGATTTCACATACCATCGAg < 2:211332/138‑1 (MQ=255) | ATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGACAAATCGTCCAGCGTTTCGAACGGGATTTCACATACCATCGAG > NZ_CP009273/1393175‑1393430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |