New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	3642840 =	39 (1.260)	3 (0.110)	3/218	2.5	8.4%	coding (546/1290 nt)	arsB	arsenite/antimonite:H(+) antiporter ArsB
	?	NZ_CP009273	3644036 =	30 (1.080)					intergenic (+14/‑615)	arsC/BW25113_RS18155	glutaredoxin‑dependent arsenate reductase/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

GGCGTTCGTGATGGCGGCCGGATTCATTGCCGATACCGCCAGCCTGCCGCTTATTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCGATCAAAGATCCTGCTACGTTCAAAACTGGC  >  NZ_CP009273/3642705‑3642975                                                                                                                                        |                                                                                                                                        cctgatgcgctacgcctgtcaggcctacaaataacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgcatccgacataaataaagcgcacttttctaacaacctgtgggggGGa                                                                                                                                       <  1:586940‑M1/3‑1 (MQ=255)  gCGTTCGTGATGGCGGCCGGATTCATTGCCGATACCGCCAGCCTGCCGCTTATTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGa                                                                                                                                       <  2:187046/137‑1 (MQ=255)     ttCGTGATGGCGGCCGGATTCATTGCCGATACCGCCAGCCTGCCGCTTATTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATcg                                                                                                                                  >  1:91826/1‑139 (MQ=255)         tGATGTCGGCCGGATTCATTGCCGATACCGCCAGCCTGCCGCTTATTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGCTATcgccgc                                                                                                                              >  2:145196/1‑139 (MQ=255)                     gATTCATTGCCGATACCGCCAGCCTGCCGCTTATTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCAc                                                                                                                  <  2:242399/139‑1 (MQ=255)                      aTTCATTGCCGATACCGCCAGCCTGCCGCTTATTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACg                                                                                                                 <  1:534913/139‑1 (MQ=255)                             gCCGATACCGCCAGCCTGCCGCTTATTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTg                                                                                                           <  1:359169/138‑1 (MQ=255)                                gATACCGCCAGCCTGCCGCTTATTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGc                                                                                                                     >  2:409214/1‑125 (MQ=255)                                gATACCGCCAGCCTGCCGCTTATTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGc                                                                                                                     <  1:409214/125‑1 (MQ=255)                                 aacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgcatccgacataaataaagcgcacttttctaacaacctgtgggggGGATATCGCCGCGATTGTTGCCACGCTGGTGATGt                                                                                                       <  1:212601‑M1/35‑1 (MQ=255)                                          ttcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgcatccgacataaataaagcgcacttttctaacaacctgtgggggGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTa                                                                                             >  2:402790‑M1/95‑139 (MQ=255)                                                cGCTTATTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCg                                                                                       <  2:430916/139‑1 (MQ=255)                                                 gCTTATTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGc                                                                                      <  2:512097/139‑1 (MQ=255)                                                     aTTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCaa                                                                                    <  2:410303/137‑1 (MQ=255)                                                     aTTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCa                                                                                     >  1:144876/1‑136 (MQ=255)                                                         tctcCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGatat                                                                              >  1:508395/1‑139 (MQ=255)                                                         tctcCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGata                                                                               <  2:228943/138‑1 (MQ=255)                                                             cAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCg                                                                          <  2:543783/139‑1 (MQ=255)                                                             cAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCg                                                                          <  2:129427/139‑1 (MQ=255)                                                             cAACCTGGTGAATATCGTTTCCGCTGATTTCTTT‑GCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCg                                                                          <  1:461072/138‑1 (MQ=255)                                                                ccTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAg                                                                       <  2:534092/139‑1 (MQ=255)                                                                 taggtcggataagacgcgccagcgtcgcatccgacataaataaagcgcacttttctaacaacctgtgggggGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAg                                                                       >  2:212601‑M1/72‑138 (MQ=255)                                                                   ggTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAAc                                                                    >  1:466224/1‑139 (MQ=255)                                                                    gTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGaa                                                                     <  2:532297/137‑1 (MQ=255)                                                                         tatCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGa                                                               >  1:386795/1‑138 (MQ=255)                                                                                tCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGgcg                                                        <  1:64660/138‑1 (MQ=255)                                                                                tCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGgcg                                                        <  1:149417/138‑1 (MQ=255)                                                                                                          tCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATACGGCGCTGCTGAAATCTCCCGCAGAAGCGAt                              >  1:201891/1‑138 (MQ=255)                                                                                                            gcgAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATACGGCGCTGCTGAAATCTCCCGCAGAAGCGATCaa                           <  2:201891/139‑1 (MQ=255)                                                                                                              gAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCGATCAAAg                         <  2:144876/139‑1 (MQ=255)                                                                                                                 tACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCGATCAAAGATc                      >  1:495488/1‑139 (MQ=255)                                                                                                                      cTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCg                                <  1:456763/124‑1 (MQ=255)                                                                                                                      cTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCg                                >  2:456763/1‑124 (MQ=255)                                                                                                                      cTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCGATCAAAGATCCTGCt                 <  2:195112/139‑1 (MQ=255)                                                                                                                      cTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCGATCAAAGATCCTGCt                 <  1:552958/139‑1 (MQ=255)                                                                                                                             aTGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGt                                                                                                            >  2:238880/1‑41 (MQ=255)                                                                                                                             aTGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGt                                                                                                            <  1:238880/41‑1 (MQ=255)                                                                                                                                gTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCGATCaa                           <  1:117648/119‑1 (MQ=255)                                                                                                                                gTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCGATCaa                           >  2:117648/1‑119 (MQ=255)                                                                                                                                gTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCGATCAAAGATCCTGCTACGTTCaaaa       >  2:212945/1‑139 (MQ=255)                                                                                                                                  gCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCGATCAAAGATCCTGCTACGTTCAAAAct     >  2:511049/1‑139 (MQ=255)                                                                                                                                    cGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCGATCAAAGATCCTGCTACGGTCAAAActgg   >  2:259367/1‑139 (MQ=255)                                                                                                                                     ggTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCGATCAAAGATCCTGCTACGTTCAAAActggc  >  1:487481/1‑139 (MQ=255)                                                                                                                                        |                                                                                                                                        GGCGTTCGTGATGGCGGCCGGATTCATTGCCGATACCGCCAGCCTGCCGCTTATTGTCTCCAACCTGGTGAATATCGTTTCCGCTGATTTCTTTGGCCTCGGCTTTCGCGAATACGCCTCGGTGATGGTGCCGGTGGATATCGCCGCGATTGTTGCCACGCTGGTGATGTTACATCTCTATTTTCGCAAAGATATTCCGCAGAACTACGATATGGCGCTGCTGAAATCTCCCGCAGAAGCGATCAAAGATCCTGCTACGTTCAAAACTGGC  >  NZ_CP009273/3642705‑3642975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.