| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,393,311 | A→G | I158T (ATC→ACC) | fnr ← | fumarate/nitrate reduction transcriptional regulator Fnr |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,393,311 | 0 | A | G | 100.0% | 84.7 / NA | 22 | I158T (ATC→ACC) | fnr | fumarate/nitrate reduction transcriptional regulator Fnr |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (10/12); total (10/12) | |||||||||||
ATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGACAAATCGTCCAGCGTTTCGAACGGGATTTCACATACCATCGAGGTTTCCAG > NZ_CP009273/1393175‑1393438 | aTAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTc < 1:612582/139‑1 (MQ=255) ttACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAGTGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGt > 2:438207/1‑139 (MQ=255) cGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGcc > 1:338060/1‑139 (MQ=255) cGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGcc > 2:154491/1‑139 (MQ=255) aTCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCAc < 2:477496/139‑1 (MQ=255) gAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGa < 2:602985/139‑1 (MQ=255) gggAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATctg > 2:539663/1‑139 (MQ=255) cgTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGAt > 1:513458/1‑139 (MQ=255) gTTGGGCAAAACGACGGGACAGGTTGTAGATGAGTGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGAtt < 1:438207/139‑1 (MQ=255) cgGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGAt < 1:474067/76‑1 (MQ=255) cgGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGAt > 2:474067/1‑76 (MQ=255) aTGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGACAAATCGTCCAGCg > 1:15760/1‑139 (MQ=255) aaTGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGAc > 1:496506/1‑123 (MQ=255) aaTGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGAc < 2:496506/123‑1 (MQ=255) cAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGACAAATCGTCCAGCGTTTCGaa < 1:572286/139‑1 (MQ=255) aGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGACAAATCGTCCAGCGTTTCGAACGGGa < 1:6131/139‑1 (MQ=255) cTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGAtt > 2:178953/1‑90 (MQ=255) cTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGAtt < 1:178953/90‑1 (MQ=255) cTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGACAAATCGTCCAGCGTTTCGAACggg < 2:317063/130‑1 (MQ=255) cTCGGCATTTTTCTTCGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGACAAATCGTCCAGCGTTTCGAACggg > 1:317063/1‑130 (MQ=255) tcttcGACAACAGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGACAAATCGTCCAGCGTTTCGAACGGGATTTCACATACCATCGAgg < 2:513458/138‑1 (MQ=255) acaacaGCAGGGTCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTGCCGGACAAATCGTCCAGCGTTTCGAACGGGATTTCACATACCATCGAGGTTTCCAg < 2:489383/139‑1 (MQ=255) | ATAGTTACCGATATCGCCACGAGTCATCGTCAGGCGGAATTCACGAGGGGAGAAGCCGCGTTGGGCAAAACGACGGGACAGGTTGTAGATGAATGCAGCCAGACGTTCCTCGGCATTTTTCTTCGACAACAGCAGGATCATGTCCTGATCGCCTTTGATTTCACCGCTCATCAGACGCATCATCTGCTGACGCAGATTCGGCATTTTACCGGACAAATCGTCCAGCGTTTCGAACGGGATTTCACATACCATCGAGGTTTCCAG > NZ_CP009273/1393175‑1393438 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |