| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,302,553 | Δ1 bp | coding (268/651 nt) | alkB ← | DNA oxidative demethylase AlkB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,302,551 | 0 | G | . | 100.0% | 57.0 / NA | 14 | coding (270/651 nt) | alkB | DNA oxidative demethylase AlkB |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (6/8); total (6/8) | |||||||||||
TTCGTCTTTATCCTGATGCAGCGACAGTTTCGCGCCAGGAGCGTAGCGGTTGATAAGACAAGCATCTGGCTGGAAATCTGGATAGCCCGCCGCCGTAGCCGCACGTTGACATAAATTATGAAAACTCTGTGGCATGGCGGGCCACGGTTTATTTGTTTGCGGATCAATGGGCGAATAGAGATAACCTTGCCGATGGGTCGTCCAGCCCAGATGCCCACAGTTGGTCATCGCCACCGACATGGTATATCCCCCGGGGGTGACCATCTGG > NZ_CP009273/2302413‑2302680 | ttCGTCTTTATCCTGATGCAGCGACAGTTTCGCGCCAGGAGCGTAGCGGTTGATAAGACAAGCATCTGGCTGGAAATCTGGATAGCCCGCCGCCGTAGCCGCACGTTGACATAAATTATGAAAACTCTGTGGCATGGCg > 2:530863/1‑139 (MQ=255) tCTTTATCCTGATGCAGCGACAGTTTCGCGCCAGGAGCGTAGCGGTTGATAAGACAAGCATCTGGCTGGAAATCTGGATAGCCCGCCGCCGTAGCCGCACGTTGACATAAATTATGAAAACTCTGTGGCATGGCggcca > 1:421411/1‑136 (MQ=255) aTGCTGCGACAGTTTCGCGCCAGGAGCGTAGCGGTTGATAAGACAAGCATCTGGCTGGAAATCTGGATAGCCCGCCGCCGTAGCCGCACGTTGACATAAATTATGAAAACTCTGTGGCATGGC‑GGCCACGGTTTAtttg > 2:494200/1‑139 (MQ=255) tttCGCGCCAGGAGCGTAGCGGTTGATAAGACAAGCATCTGGCTGGAAATCTGGATAGCCCGCCGCCGTAGCCGCACGTTGACATAAATTATGAAAACTCTGTGGCATGGC‑GGCCACGGTTTATTTGTTTGCGGATCaa < 1:526616/139‑1 (MQ=255) gagcCAGGAGGGTAGGGGTTGATAAGACAAGCATCTGGCTGGAAATCTGGATAGCCCGCCGCCGTAGCCGCACGTTGACATAAATTATGAAAACTCTGTGGCATGGC‑GGCCACGGTTTATTTGTTTGCGGATCAATggg < 2:460808/137‑1 (MQ=255) ggctggAAATCTGGATAGCCCGCCGCCGTAGCCGCACGTTGACATAAATTATGAAAACTCTGTGGCATGGC‑GGCCACGGTTTATTTGTTTGCGGATCaa > 1:101359/1‑99 (MQ=255) ggctggAAATCTGGATAGCCCGCCGCCGTAGCCGCACGTTGACATAAATTATGAAAACTCTGTGGCATGGC‑GGCCACGGTTTATTTGTTTGCGGATCaa < 2:101359/99‑1 (MQ=255) gAAATCTGGATAGCCCGCCGCCGTAGCCGCACGTTGACATAAATTATGAAAACTCTGTGGCATGGC‑GGCCACGGTTTATTTGTTTGCGGATCAATGGGCGAATAGAGATAACCTTGCCGATGGGTCGTCCAGCCCAg < 1:123809/137‑1 (MQ=255) gATAGCCCGCCGCCGTAGCCGCACGTTGACATAAATTATGAAAACTCTGTGGCATGGC‑GGCCACGGTTTATTTGTTTGCGGATCAATGGGCGAATAGAGATAACCTTGCCGATGGGTCGTCCAGCCCAGATGCCca < 1:494200/136‑1 (MQ=255) gTAGCCGCACGTTGACATAAATTATGAAAACTCTGTGGCATGGC‑GGCCACGGTTTATTTGTTCGCGGATCAATGGGCGAATAGAGATAACCTTGCCGATGGGTCGTCCAGCCCAGATGCCCACAGTTGGTCATCGCCAc < 2:44061/139‑1 (MQ=255) gCACGTTGACATAAATTATGAAAACTCTGTGGCATGGC‑GGCCACGGTTTATTTGTTTGCGGATCAATGGGCGAATAGAGATAACCTTGCCGATGGGTCGTCCAGCCCAGATGCCCACAGTTGGTCATCGCCACCGACAt > 1:521863/1‑139 (MQ=255) gACATAAATTATGAAAACTCTGTGGCATGGC‑GGCCACGGTTTATTTGTTTGCGGATCAATGGGCGAATAGAGATAACCTTGCCGATGGGTCGTCCAGCCCAGATGCCCACAGTTGGTCATCGCCACCGACATGGtata < 2:336308/138‑1 (MQ=255) aTTATGAAAACTCTGTGGCATGGC‑GGCCACGGTTTATTTGTTTGCGGATCAATGGGCGAATAGAGATAACCTTGCCGATGGGTCGTCCAGCCCAGATGCCCACAGTTGGTCATCGCCACCGa > 1:485347/1‑122 (MQ=255) aTTATGAAAACTCTGTGGCATGGC‑GGCCACGGTTTATTTGTTTGCGGATCAATGGGCGAATAGAGATAACCTTGCCGATGGGTCGTCCAGCCCAGATGCCCACAGTTGGTCATCGCCACCGa < 2:485347/122‑1 (MQ=255) tGAAAACTCTGTGGCATGGC‑GGCCACGGGTTATTTGTTTGCGGATCAATGGGCGAATAGAGATAACCTTGCCGATGGGTCGTCCAGCCCAGATGCCCACAGTTGGTCATCGCCACCGACATGGTATATCCCCCGGGGGt > 2:160133/1‑139 (MQ=255) gtgGCATGGC‑GGCCACGGTTTATTTGTTTGCGGATCAATGGGCGAATAGAGATAACCTTGCCGATGGGTCGTCCAGCCCAGATGCCCACAGTTGGTCATCGCCACCGACATGGTATATCCCCCGGGGGTGACCATCTgg > 1:299204/1‑139 (MQ=255) | TTCGTCTTTATCCTGATGCAGCGACAGTTTCGCGCCAGGAGCGTAGCGGTTGATAAGACAAGCATCTGGCTGGAAATCTGGATAGCCCGCCGCCGTAGCCGCACGTTGACATAAATTATGAAAACTCTGTGGCATGGCGGGCCACGGTTTATTTGTTTGCGGATCAATGGGCGAATAGAGATAACCTTGCCGATGGGTCGTCCAGCCCAGATGCCCACAGTTGGTCATCGCCACCGACATGGTATATCCCCCGGGGGTGACCATCTGG > NZ_CP009273/2302413‑2302680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |