| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,200,135 | (A)5→4 | pseudogene (279/1137 nt) | BW25113_RS05965 → | terminase large subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,200,131 | 0 | A | . | 100.0% | 58.3 / NA | 14 | pseudogene (275/1137 nt) | BW25113_RS05965 | terminase large subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (5/9); total (5/9) | |||||||||||
AGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTC‑TTTAAAACAAAACACCTCAATATCTGGGCGTCGG > NZ_CP009273/1200002‑1200259 | aGGGGCCGTGCTACGACAAACGGCGGGAAGGCATCGAGATGCTCAACGGCTCGGGGCCAAACGATGAACTGTTCGGGATCATCTATACCGGTGGTGAAGGTGACGCACGGACCCACCCGGAGGTGCTGGaaaagcacat > 2:513823/1‑133 (MQ=255) gggCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATcc < 2:151493/139‑1 (MQ=255) tGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAatat > 2:335474/1‑139 (MQ=255) aCAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCgtg < 2:206713/139‑1 (MQ=255) aTGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGtt < 1:335474/139‑1 (MQ=255) aaCGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGt < 1:529194/137‑1 (MQ=255) aCTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACg < 2:553256/139‑1 (MQ=255) ttCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCg > 1:181235/1‑139 (MQ=255) tcTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAAc > 1:343476/1‑139 (MQ=255) aCCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGGaaaag > 2:561596/1‑47 (MQ=255) aCCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGGaaaag < 1:561596/48‑2 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGt > 2:31431/1‑91 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGt < 1:31431/91‑1 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTC‑TTTaa > 2:318326/1‑138 (MQ=255) acgacTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTC‑TTTAAAACAAAACACCt < 2:491776/138‑1 (MQ=255) accCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTC‑TTTAAAACAAAACACCTCAATATCTGGGCg < 2:333916/139‑1 (MQ=255) cAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTTAAAACAAAACACCTCAATATCTGGGCGTCgg < 1:9634/139‑1 (MQ=255) | AGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTC‑TTTAAAACAAAACACCTCAATATCTGGGCGTCGG > NZ_CP009273/1200002‑1200259 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |