New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 303074	49 (1.640)	3 (0.110)	3/230	2.9	6.0%	coding (1970/2526 nt)	ecpC	fimbrial usher EcpC
	?	NZ_CP009273	= 303087	49 (1.750)					coding (1957/2526 nt)	ecpC	fimbrial usher EcpC
Rejected: Frequency below/above cutoff threshold.

AGGGAGAGAGCGGGAGATAGTTACGCTTGCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGA  >  NZ_CP009273/302937‑303209                                                                                                                                          |                                                                                                                                        aGGGAGAGAGCGGGAGATAGTTACGCTTGCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAG                                                                                                                                         >  1:231860‑M1/1‑138 (MQ=255)       agagCGGGAGATAGTTACGCTTGCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGtt                                                                                                                                  >  2:167272/1‑139 (MQ=255)       agagCGGGAGATAGTTACGCTTGCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGtt                                                                                                                                  >  2:576581/1‑139 (MQ=255)        gagCGGGAGATAGTTACGCTTGCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGttt                                                                                                                                 >  2:338979/1‑139 (MQ=255)             ggAGATAGTTACGCTTGCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTAcc                                                                                                                            >  2:97355/1‑139 (MQ=255)                 aTAGTTACGCTTGCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgc                                                                                                                        <  1:19406‑M2/139‑5 (MQ=255)                        cGCTTGCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGa                                                                                                                 >  1:136901/1‑139 (MQ=255)                          cTTGCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACg                                                                                                               >  2:22112/1‑139 (MQ=255)                             gCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTa                                                                                                                              <  1:2075/121‑1 (MQ=255)                             gCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTa                                                                                                                              >  2:2075/1‑121 (MQ=255)                             gCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTg                                                                                                            >  2:306628/1‑139 (MQ=255)                                    aGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTgg                                                                                                     <  2:213015/139‑1 (MQ=255)                                        ggAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGt                                                                                                 <  2:366500/139‑1 (MQ=255)                                        ggAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGt                                                                                                 >  2:559405/1‑139 (MQ=255)                                         aaaaatCCTCCCGTTGATTTTGGCGCTGATCTGTCCTTCGTCCACCAGCCCGGTGTTAAATATCACCCCAGCTTTGCCACCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgccagcgggcggactgatggcaacgc                                                                                                >  2:466662‑M2/2‑111 (MQ=255)                                            aaTCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAg                                                                                             <  2:236324/139‑1 (MQ=255)                                             aTCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGt                                                                                            <  1:258080/139‑1 (MQ=255)                                                  cccGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgccagcgggcggactgatggcaacgctggggtga                                                                                        <  2:265292‑M2/138‑37 (MQ=255)                                                  cccGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTa                                                                                       <  1:576581/139‑1 (MQ=255)                                                          ttttGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgccagcgggcggactgatggcaacgctggggtgatattcaaca                                                                               >  1:265292‑M2/1‑94 (MQ=255)                                                                cgcTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTc                                                                         >  1:150791/1‑139 (MQ=255)                                                                  cTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTccg                                                                       <  1:167272/139‑1 (MQ=255)                                                                     aTCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTccgccg                                                                    >  1:186948/1‑139 (MQ=255)                                                                          aCCGTCGTCCTCCAGCCCGGTGTTGAATATCCCCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTccgccg                                                                    <  2:574598/134‑1 (MQ=255)                                                                          aCCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTccgccg                                                                    <  2:306995/134‑1 (MQ=255)                                                                             gtcgtcCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTg                                                            <  2:136901/139‑1 (MQ=255)                                                                               cgtcCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGt                                                                                            <  2:343262/105‑1 (MQ=255)                                                                               cgtcCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGt                                                                                            >  1:343262/1‑105 (MQ=255)                                                                               cgtcCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGcc                                                                            >  1:403906/1‑121 (MQ=255)                                                                               cgtcCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGcc                                                                            <  2:403906/121‑1 (MQ=255)                                                                               cgtcCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGAc                                                          >  2:122825/1‑139 (MQ=255)                                                                               cgtcCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGAc                                                          >  2:284089/1‑139 (MQ=255)                                                                                      cAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGc                                                   >  2:443575/1‑139 (MQ=255)                                                                                       aGCCCGGTGTTGAATATCCCCCCAGCGTTGCCCTCAGTCCGCCCGCTGGCAGCAATGTTTTTGCCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCg                                                  <  2:164067/139‑1 (MQ=255)                                                                                         cccGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGtt                                                >  1:269616/1‑139 (MQ=255)                                                                                          ccGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTc                                               <  1:161995/139‑1 (MQ=255)                                                                                            ggTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCg                                             <  1:378173/139‑1 (MQ=255)                                                                                              tgtTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGggtaaaaacattgctgccagcgggcggactgatggcaacgctggggtgatattcaacaccgggctggaggacgacggtcagatcagcgccaaaa                                           >  1:265292‑M1/1‑45 (MQ=255)                                                                                              tgtTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTccgccg                                                                    <  1:18381/114‑1 (MQ=255)                                                                                              tgtTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTccgccg                                                                    >  2:18381/1‑114 (MQ=255)                                                                                              tgtTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCt                                           <  1:365404/139‑1 (MQ=255)                                                                                              tgtTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCt                                           <  1:212258/139‑1 (MQ=255)                                                                                                ttGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTgg                                         >  2:476398/1‑139 (MQ=255)                                                                                                       tCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGggtaaaaacattgctgccagcgggcggactgatggcaacgctggggtgatattcaacaccgggctggaggacgacggtcagatcagcgccaaaatcaacggg                                   <  2:265292‑M1/138‑103 (MQ=255)                                                                                                        cACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTTACGTAACCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGTAAc                                   >  2:234238/1‑137 (MQ=255)                                                                                                        cACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGTAAc                                   >  2:492930/1‑137 (MQ=255)                                                                                                        cACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGTAAc                                   >  2:67168/1‑137 (MQ=255)                                                                                                          ccccAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGTAACGAGc                               <  1:476398/139‑1 (MQ=255)                                                                                                             cAGCGTTGCCATCGGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGTAACGAGCGTc                            <  1:375445/139‑1 (MQ=255)                                                                                                               gCGTTGCCATCAGTCCGCCCGCTGGCAGggtaaaaacattgctgccagcgggcggactggtggcaaagctggggtgatatttaacaccgggctggtggacgaaggacagatcagcgccaaaatcaacgggaggattttt                          >  2:466662‑M1/1‑28 (MQ=255)                                                                                                               gCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCg                                             <  1:235537/120‑1 (MQ=255)                                                                                                               gCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCg                                             >  2:235537/1‑120 (MQ=255)                                                                                                                 gtagCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGTAACGAGCGTCGAAt                        <  2:150773/136‑1 (MQ=255)                                                                                                                 ggtGCCAGCAGCCCCCCCGCTGGCAGCTATGTTTTTACCCTGCCAGCCGACGCTGCAATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACATTCAGCGTTCCGCTGGCGTAACGAGCGTCGAAt                        <  2:331585/137‑1 (MQ=255)                                                                                                                 gTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGTAACGAGCGTCGAAt                        <  1:338979/139‑1 (MQ=255)                                                                                                                     ccATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGTAACGAGCGTCGAATtgtg                    >  2:443096/1‑139 (MQ=255)                                                                                                                     ccATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGTAACGAGCGGCGAATtgtg                    >  2:445768/1‑139 (MQ=255)                                                                                                                                       gCAGggtaaaaacattgctgccagcgggcggactgatggcaacgctggggtgatattcaacaccgggctggaggacgacggtcagatcagcgccaaaatcaacgggcggattttcccgcttaacggcaagcgtaactat  <  1:19406‑M1/139‑136 (MQ=255)                                                                                                                                          |                                                                                                                                        AGGGAGAGAGCGGGAGATAGTTACGCTTGCCGTTAAGCGGGAAAATCCGCCCGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGTAACGAGCGTCGAATTGTGCATACGCCCCGCCGCTGA  >  NZ_CP009273/302937‑303209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.