Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	351,822	0	T	C	63.9%	74.9 / 94.5	83	I397T (ATC→ACC)	codB	cytosine permease
Reads supporting (aligned to +/- strand):  ref base T (16/14);  new base C (28/25);  total (44/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.68e-01
Rejected as consensus: Frequency below/above cutoff threshold.

TTGCGACCACGCGTATGATGAGTGTCAATTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAG  >  NZ_CP009273/351690‑351959                                                                                                                                     |                                                                                                                                          ttGCGACCACGCGTATGATGAGTGTCAATTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTaa                                                                                                                                     >  2:453681/1‑139 (MQ=255)          cgcgTATGATGAGTGTCAATTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGAtttt                                                                                                                            >  1:567484/1‑139 (MQ=255)          cgcgTATGATGAGTGTCAATTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGAtttt                                                                                                                            >  1:531004/1‑139 (MQ=255)          cgcgTATGATGAGTGTCAATTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGGTACAGGGAATTGTTCCGGTCAAGGCGGTATTAGGTGGCGCGCTGAGGTATCTGATCCTTAAgcctgtctc                                                                                                                            >  2:235632/1‑133 (MQ=255)              tATGATGAGTGTCAATTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAAt                                                                                                                        >  1:525790/1‑139 (MQ=255)                     aGTGTCAATTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTaaaa                                                                                                                 >  1:385282/1‑139 (MQ=255)                     aGTGTCAATTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTaaaa                                                                                                                 >  2:97758/1‑139 (MQ=255)                     aGTGTCAATTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTaaaa                                                                                                                 >  2:556988/1‑139 (MQ=255)                     aGTGTCAATTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTaaaa                                                                                                                 >  1:137451/1‑139 (MQ=255)                         tCAATTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGa                                                                                                              >  1:114620/1‑138 (MQ=255)                           aaTTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGAcag                                                                                                           <  1:556988/139‑1 (MQ=255)                            aTTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGAcag                                                                                                           >  2:350150/1‑138 (MQ=255)                            aTTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGAcag                                                                                                           >  1:121722/1‑138 (MQ=255)                            aTTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGAcag                                                                                                           >  2:251510/1‑138 (MQ=255)                                ggTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAgcagca                                                                                                      <  2:567484/139‑1 (MQ=255)                                ggTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAgcagca                                                                                                      <  2:121722/139‑1 (MQ=255)                                 gTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCaa                                                                                                     >  1:17765/1‑139 (MQ=255)                                  tGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAAt                                                                                                    <  1:350150/139‑1 (MQ=255)                                    gCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGa                                                                                                  <  1:534724/139‑1 (MQ=255)                                     cGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGAc                                                                                                 <  1:251510/139‑1 (MQ=255)                                      gATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACg                                                                                                <  1:159142/139‑1 (MQ=255)                                             gCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          <  1:302761/138‑1 (MQ=255)                                             gCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          <  1:449156/138‑1 (MQ=255)                                             gCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          <  2:17765/138‑1 (MQ=255)                                             gCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          <  2:144883/138‑1 (MQ=255)                                             gCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          <  2:137451/138‑1 (MQ=255)                                             gCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          <  2:66425/138‑1 (MQ=255)                                                    ccTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTaa                                                                                  <  2:130020/139‑1 (MQ=255)                                                    ccTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTaa                                                                                  <  1:244146/139‑1 (MQ=255)                                                         gggATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAgtg                                                                             <  2:531004/139‑1 (MQ=255)                                                         gggATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAGCCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAgtg                                                                             <  1:393077/139‑1 (MQ=255)                                                         gggATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAgtg                                                                             <  2:185979/139‑1 (MQ=255)                                                              tgctgcAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGaa                                                                        >  2:436089/1‑139 (MQ=255)                                                               gctgcAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACa                                                                                <  1:222067/130‑1 (MQ=255)                                                               gctgcAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACa                                                                                >  2:222067/1‑130 (MQ=255)                                                               gctgcAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTaa                                                                                                                   >  1:558408/1‑95 (MQ=255)                                                               gctgcAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTaa                                                                                                                   <  2:558408/95‑1 (MQ=255)                                                                          cTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACagcagc                                                                                                       <  2:310721/96‑1 (MQ=255)                                                                          cTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACagcagc                                                                                                       >  1:310721/1‑96 (MQ=255)                                                                          cTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTaca                                                            <  1:398255/139‑1 (MQ=255)                                                                          cTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTac                                                             >  2:492700/1‑138 (MQ=255)                                                                           tGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTaca                                                            >  2:357583/1‑138 (MQ=255)                                                                           tGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTaca                                                            >  1:293404/1‑138 (MQ=255)                                                                           tGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTaca                                                            >  2:578160/1‑138 (MQ=255)                                                                             gTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTacaaa                                                          <  2:45036/138‑1 (MQ=255)                                                                                  cGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          <  1:177673/101‑1 (MQ=255)                                                                                  cGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          >  2:177673/1‑101 (MQ=255)                                                                                  cGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTaca                                                            >  2:395528/1‑131 (MQ=255)                                                                                  cGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTaca                                                            <  1:395528/131‑1 (MQ=255)                                                                                  cGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAatta                                                    >  2:275268/1‑139 (MQ=255)                                                                                     gAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          <  1:24811/98‑1 (MQ=255)                                                                                     gAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          >  2:24811/1‑98 (MQ=255)                                                                                      aaTTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTaa                                                <  1:579070/139‑1 (MQ=255)                                                                                       aTTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAAc                                               <  1:32366/139‑1 (MQ=255)                                                                                           ttCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGccc                                           >  1:279476/1‑139 (MQ=255)                                                                                                gTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTa                                      >  2:238533/1‑139 (MQ=255)                                                                                                   aaCGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTAc                                     >  2:122851/1‑137 (MQ=255)                                                                                                   aaCGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTAc                                     >  1:239344/1‑137 (MQ=255)                                                                                                     cgcgGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAgg                                 <  2:486609/139‑1 (MQ=255)                                                                                                     cgcgGTATTAGGTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAgg                                 <  1:275268/139‑1 (MQ=255)                                                                                                                gTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          <  2:299722/71‑1 (MQ=255)                                                                                                                gTGGCGCGCTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          >  1:299722/1‑71 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACa                                                                                <  1:86789/77‑1 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACa                                                                                >  2:86789/1‑77 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTAc                                     <  1:100664/120‑1 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTAc                                     >  2:100664/1‑120 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAGGCGAAGAGGGGCtgtg                  >  1:319915/1‑139 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAGGCGAAGAGGGGCtgtg                  >  2:102331/1‑139 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAGGCGAAGAGGGGCtgtg                  >  1:546082/1‑139 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGAc                                                                                                 >  1:423771/1‑60 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGAc                                                                                                 <  2:423771/60‑1 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          <  2:581970/67‑1 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCAtgtg                                                                                          >  1:581970/1‑67 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGcc                                            >  2:414581/1‑113 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGcc                                            <  1:414581/113‑1 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTAc                                     >  2:277284/1‑120 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTAc                                     <  1:277284/120‑1 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAgg                                 <  1:59937/124‑1 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAgg                                 >  2:59937/1‑124 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAGGCGAAGAGGGGCtgtg                  >  2:156317/1‑139 (MQ=255)                                                                                                                    cgcgcTGAGCTATCTGACCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAGGCGAAGAGGGGCtgtg                  >  1:453753/1‑139 (MQ=255)                                                                                                                      cgcTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTgg                 >  2:117630/1‑138 (MQ=255)                                                                                                                       gcTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCa               <  1:63305/139‑1 (MQ=255)                                                                                                                                     tCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAg  >  2:265520/1‑138 (MQ=255)                                                                                                                                     |                                                                                                                                          TTGCGACCACGCGTATGATGAGTGTCAATTGGGTGGCGATTCTGGCGGTCGCCTTGGGGATTGCTGCAGGCCACTGGTTACCGGGAATTGTTCCGGTCAACGCGGTATTAGGTGGCGCGCTGAGCTATCTGATCCTTAACCCGATTTTGAATCGTAAAACGACAGCAGCAATGACGCATGTGGAGGCTAACAGTGTCGAATAACGCTTTACAAACAATTATTAACGCCCGGTTACCAGGCGAAGAGGGGCTGTGGCAGATTCATCTGCAG  >  NZ_CP009273/351690‑351959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑