| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,507,050 | T→G | G380G (GGT→GGG) | ydcS → | ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,507,050 | 0 | T | G | 100.0% | 86.4 / NA | 26 | G380G (GGT→GGG) | ydcS | ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (9/17); total (9/17) | |||||||||||
GGCGAAAAAGGTTGTGAAACCAACGGTTTTAACTATTTCGACAAAATCGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGTCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGGTTGTACGGTGACGTGCGCGCAGTAGATGGCGTCAGTATTGCGATAAAAGATGGTGAGTTCTTCTC > NZ_CP009273/1506916‑1507174 | ggCGAAAAAGGTTGTGAAACCAACGGTTTTAACTATTTCGACAAAATCGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGgcgc > 1:552443/1‑138 (MQ=255) aaaaGGTTGTGAAACCAACGGTTTTAACTATTTCGACAAAATCGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACtt > 1:314558/1‑139 (MQ=255) gtgAAACCAACGGTTTTAACTATTTCGACAAAATCGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTggg < 2:314558/138‑1 (MQ=255) gtgAAACCAACGGTTTTAACTATTTCGACAAAATCGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTggg < 1:568072/138‑1 (MQ=255) ccAACGGTTTTAACTATTTCGACAAAATCGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCttt < 2:23833/139‑1 (MQ=255) aCGGTTTTAACTATTTCGACAAAATCGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTAt > 1:341874/1‑138 (MQ=255) aTCGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACaa < 2:10725/139‑1 (MQ=255) cTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTcg < 1:451597/138‑1 (MQ=255) cTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTcg < 2:102355/138‑1 (MQ=255) gAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCgg < 1:287258/138‑1 (MQ=255) ataGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACa < 2:377191/117‑1 (MQ=255) ataGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACa > 1:377191/1‑117 (MQ=255) taGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGGTTGTACGGTGa < 1:219888/138‑1 (MQ=255) aaGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCg > 2:157564/1‑73 (MQ=255) aaGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCg < 1:157564/73‑1 (MQ=255) gggggCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGGTTGTACGGTGACGTgcgcgc < 2:552443/139‑1 (MQ=255) ggCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGGTTGTACGGTGACGTGCGCGCAg > 1:522525/1‑138 (MQ=255) cAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCGTTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGc > 2:460282/1‑89 (MQ=255) cAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGc < 1:460282/89‑1 (MQ=255) cGCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGGTTGTACGGTGACGTGCGCGCAGTAGATGGCGTCAGTATTGCGATAAAAGAt > 2:206144/1‑139 (MQ=255) gCAGGATTACATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGGTTGTACGGTGACGTGCGCGCAGTAGATGGCGTCAGTATTGCGATAAAAGATg < 2:399405/139‑1 (MQ=255) cATTGCCATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGGTTGTACGGTGACGTGCGCGCAGTAGATGGCGTCAGTATTGCGATAAAAGATGGTGAGttct < 2:330756/139‑1 (MQ=255) ccATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTcg < 1:87391/70‑1 (MQ=255) ccATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTcg > 2:87391/1‑70 (MQ=255) ccATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGGTTGTACGGTGACGTGCGCGCAGTAGAt < 2:300529/100‑1 (MQ=255) ccATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGGTTGTACGGTGACGTGCGCGCAGTAGAt > 1:300529/1‑100 (MQ=255) ccATTATGGGCGGGCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGGTTGTACGGTGACGTGCGCGCAGTAGATGGCGTCAGTATTGCGATAAAAGATGGTGAGTTCTtctc < 2:15734/138‑1 (MQ=255) | GGCGAAAAAGGTTGTGAAACCAACGGTTTTAACTATTTCGACAAAATCGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATTACATTGCCATTATGGGCGGTCGCTAACTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGGTTGTACGGTGACGTGCGCGCAGTAGATGGCGTCAGTATTGCGATAAAAGATGGTGAGTTCTTCTC > NZ_CP009273/1506916‑1507174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |