| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,594,535 | T→C | intergenic (‑69/+10) | lsrK ← / ← lsrR | autoinducer‑2 kinase/transcriptional regulator LsrR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,594,535 | 0 | T | C | 100.0% | 64.1 / NA | 18 | intergenic (‑69/+10) | lsrK/lsrR | autoinducer‑2 kinase/transcriptional regulator LsrR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (7/11); total (7/11) | |||||||||||
CCGGTGCCTGCATCCAGCGCCATCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGTCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGA > NZ_CP009273/1594402‑1594666 | ccGGTGCCTGCATCCAGCGCCATCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCGGTGTAATAAGGCCAt > 1:310851/1‑139 (MQ=255) cATCCAGCGCCATCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTaa < 1:273856/137‑1 (MQ=255) aGCGCCATCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGt > 2:4885/1‑138 (MQ=255) tCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATcgc > 1:429232/1‑139 (MQ=255) aGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATcgccg < 1:195091/139‑1 (MQ=255) tagtaCTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCgctg < 2:23818/139‑1 (MQ=255) gtaCTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCgctgct < 1:313584/139‑1 (MQ=255) taCTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGctgctg > 2:132225/1‑139 (MQ=255) aTTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCt < 1:303900/138‑1 (MQ=255) aTTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCt < 1:459593/138‑1 (MQ=255) aTTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCt < 2:429232/138‑1 (MQ=255) aTTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCt > 2:303900/1‑138 (MQ=255) aTTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAAc > 1:85734/1‑139 (MQ=255) aGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCg < 1:81151/138‑1 (MQ=255) tctcCATCATTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTccccc > 1:515150/1‑139 (MQ=255) catcatTCCCG‑‑GTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTg < 1:132225/137‑1 (MQ=255) gTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCg < 2:515150/139‑1 (MQ=255) aataaGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGa < 2:85734/139‑1 (MQ=255) | CCGGTGCCTGCATCCAGCGCCATCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCG‑‑GTAATAAGGTCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGA > NZ_CP009273/1594402‑1594666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |