| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,609,528 | A→C | I156I (ATA→ATC) | yneJ → | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,609,528 | 0 | A | C | 100.0% | 76.7 / NA | 23 | I156I (ATA→ATC) | yneJ | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (14/9); total (14/9) | |||||||||||
GTCGTTATCCCAAAATTCAGTTTTCACTTTCCACCGGCCCTTCCGGCACTATGCTGGATGGTGTACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATACCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCA > NZ_CP009273/1609398‑1609650 | gtcgtTATCCCAAAATTCAGTTTTCACTTTCCACCGGCCCCTCCGGCACTATGCTGGATGGTGTACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGtata < 1:341301/139‑1 (MQ=255) aTCCCAAAATTCAGTTTTCACTTTCCACCGGCCCCTCCGGCACTATGCTGGATGGTGTACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACcgcg < 1:311569/138‑1 (MQ=255) ttttCACTTTCCACCGCCCCCTCCGGCACTATGCTGGATGGTGTACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCg < 2:141239/139‑1 (MQ=255) ttCACTTTCCACCGGCCCCTCCGGCACTATGCTGGATGGTGTACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGt < 2:539426/138‑1 (MQ=255) tGCTGGATGGTGTACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACcgcg < 1:264372/93‑1 (MQ=255) tGCTGGATGGTGTACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACcgcg > 2:264372/1‑93 (MQ=255) tGCTGGATGGTGTACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCg > 1:244959/1‑139 (MQ=255) tGCTGGATGGTGTACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCg > 1:451779/1‑139 (MQ=255) gATGGTGTACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGc > 1:537910/1‑137 (MQ=255) gATGGTGTACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGc > 2:374983/1‑137 (MQ=255) tgtACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAg > 1:74380/1‑139 (MQ=255) ggAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAAt > 1:38093/1‑139 (MQ=255) gAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAAt < 2:244959/138‑1 (MQ=255) ggAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAAt > 1:498404/1‑135 (MQ=255) ggAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAAt < 2:498404/135‑1 (MQ=255) tGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACAt > 2:454943/1‑139 (MQ=255) aTGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACcgcg < 1:317590/63‑1 (MQ=255) aTGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACcgcg > 2:317590/1‑63 (MQ=255) gTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTc < 1:454943/139‑1 (MQ=255) tACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGc > 1:372993/1‑139 (MQ=255) tACTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGc > 1:200205/1‑139 (MQ=255) cTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCa > 2:105044/1‑139 (MQ=255) cTGCCATCGACGGGATCCCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCa > 2:14159/1‑139 (MQ=255) | GTCGTTATCCCAAAATTCAGTTTTCACTTTCCACCGGCCCTTCCGGCACTATGCTGGATGGTGTACTGGAGGGAAAACTGAATGCGGCGTTTATTGATGGACCCATTAACCATACTGCCATCGACGGGATACCGGTATACCGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCA > NZ_CP009273/1609398‑1609650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |