Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 1,613,590 A→C T72P (ACC→CCC)  marR → multiple antibiotic resistance transcriptional regulator MarR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092731,613,5900AC100.0% 97.8 / NA 28T72P (ACC→CCC) marRmultiple antibiotic resistance transcriptional regulator MarR
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (18/10);  total (18/10)

GCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGC  >  NZ_CP009273/1613456‑1613724
                                                                                                                                      |                                                                                                                                      
gCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGcccc                                                                                                                                     <  2:558572/138‑1 (MQ=255)
         aCGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTgg                                                                                                                            <  1:259059/138‑1 (MQ=255)
              tATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGcc                                                                                                                      <  2:211382/139‑1 (MQ=255)
               aTCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCt                                                                                                                     >  2:87079/1‑139 (MQ=255)
                tCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTg                                                                                                                    >  2:127496/1‑139 (MQ=255)
                        cGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTa                                                                                                             >  1:238702/1‑138 (MQ=255)
                              atatTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTg                                                                                                      >  1:201334/1‑139 (MQ=255)
                                        ggCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAgg                                                                                            <  2:241647/139‑1 (MQ=255)
                                               tttAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGa                                                                                     <  2:201334/139‑1 (MQ=255)
                                                         tctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTgg                                                                                                                            >  2:471974/1‑90 (MQ=255)
                                                         tctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTgg                                                                                                                            <  1:471974/90‑1 (MQ=255)
                                                         tctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGa                                                                           >  1:270683/1‑139 (MQ=255)
                                                         tctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGa                                                                           >  2:60681/1‑139 (MQ=255)
                                                         tctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGa                                                                           >  2:11183/1‑139 (MQ=255)
                                                                  tCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGcgcg                                                                   <  2:238702/138‑1 (MQ=255)
                                                                       tGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTAc                                                             >  1:68014/1‑139 (MQ=255)
                                                                       tGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTAc                                                             >  1:207073/1‑139 (MQ=255)
                                                                                        tCCGGTTGAACTGAAAAAGGGATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGGGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTaccacc                                            >  2:32502/1‑139 (MQ=255)
                                                                                            gTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACcggcg                                        >  1:565877/1‑139 (MQ=255)
                                                                                            gTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACcggcg                                        >  2:516425/1‑139 (MQ=255)
                                                                                               gAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCggcggc                                      <  1:350664/138‑1 (MQ=255)
                                                                                                 aCTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGgcggcgcg                                   >  2:560627/1‑139 (MQ=255)
                                                                                                       aaaGGTATTGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGCGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAat                              >  2:330688/1‑138 (MQ=255)
                                                                                                               tGTCGGTCGACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAAc                      >  1:221788/1‑138 (MQ=255)
                                                                                                                 tcggtcgACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACaa                    <  1:87079/138‑1 (MQ=255)
                                                                                                                    gtcgACCTGGGAGCACTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGcc                <  2:520818/139‑1 (MQ=255)
                                                                                                                                   cTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGt                                                               <  2:419935/77‑1 (MQ=255)
                                                                                                                                   cTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGt                                                               >  1:419935/1‑77 (MQ=255)
                                                                                                                                   cTGCCCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGc  >  1:232008/1‑138 (MQ=255)
                                                                                                                                      |                                                                                                                                      
GCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGC  >  NZ_CP009273/1613456‑1613724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑