Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP009273	1,701,793	A→C	P206P (CCA→CCC)	rsxC →	electron transport complex subunit RsxC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	1,701,793	0	A	C	100.0%	68.8 / NA	21	P206P (CCA→CCC)	rsxC	electron transport complex subunit RsxC
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (10/11);  total (10/11)

ACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTA  >  NZ_CP009273/1701674‑1701920                                                                                                                        |                                                                                                                                aCGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCa                                                                                                              <  1:71599/139‑1 (MQ=255) aCGTTGATTACCACCGGGGCTGGGTGCGGGCCGTCCATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCa                                                                                                              <  2:400310/139‑1 (MQ=255)                 cgGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAAcc                                                                                              >  1:8306/1‑139 (MQ=255)                  ggCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCg                                                                                             <  1:493610/139‑1 (MQ=255)                       aGTGGGACCCGTACTTTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGc                                                                                        <  1:522567/139‑1 (MQ=255)                                          cgccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGcgcgcg                                                                     >  1:164020/1‑139 (MQ=255)                                            ccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTAt                                                                                                                   >  1:365527/1‑91 (MQ=255)                                            ccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTAt                                                                                                                   <  2:365527/91‑1 (MQ=255)                                                      tttGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGAc                                                         >  2:392200/1‑139 (MQ=255)                                                                     cgcgGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTgcgcg                                                                       >  2:61134/1‑110 (MQ=255)                                                                     cgcgGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTgcgcg                                                                       <  1:61134/110‑1 (MQ=255)                                                                                  gTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTc                             <  2:164020/139‑1 (MQ=255)                                                                                         gTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTccaacca                       >  2:156604/1‑138 (MQ=255)                                                                                         gTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTccaacca                       >  2:79539/1‑138 (MQ=255)                                                                                          tATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTgcgcg                                                                       <  1:451464/89‑1 (MQ=255)                                                                                          tATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTgcgcg                                                                       >  2:451464/1‑89 (MQ=255)                                                                                           aTTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCaaa                     >  2:269708/1‑138 (MQ=255)                                                                                            ttCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAata                   >  1:314510/1‑139 (MQ=255)                                                                                                       gcgcATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTgg          <  2:314510/137‑1 (MQ=255)                                                                                                       gcgcATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTgg          <  1:263417/137‑1 (MQ=255)                                                                                                              ttCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTa  <  2:544030/138‑1 (MQ=255)                                                                                                                        |                                                                                                                                ACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTA  >  NZ_CP009273/1701674‑1701920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑