| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,712,188 | T→C | D26G (GAT→GGT) | pdxH ← | pyridoxamine 5'‑phosphate oxidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,712,188 | 0 | T | C | 100.0% | 46.9 / NA | 19 | D26G (GAT→GGT) | pdxH | pyridoxamine 5'‑phosphate oxidase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (7/12); total (7/12) | |||||||||||
AAACGATGCGCTGATAAGGCTGACCATGTTCATCCACGGTAGCGACCACCATCGCGGTAGGGTCCGCCAGTTTGGCTTCACAAGCCTGAGAGAGCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGATCGCGGCGGCGTAACCCGCCTTTGGTGTATTCACGGCGCAGATGCGCGATTTGCTGCAATTCGTCGTTATCAGACATGGTTTTCTTTACGGATTGTCAGTGGGTGACGCTATTGTGCGCCGCCCCTGGAAAAATCT > NZ_CP009273/1712057‑1712323 | aaaCGATGCGCTGATAAGGCTGACCATGTTCATCCACGGTAGCGACCACCATCGCGGTAGGGTCCGCCAGTTTGGCTTCACAAGCCTGAGAGAGCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGACCgcggcg > 1:143182/1‑139 (MQ=255) cgcTGATAAGGCTGACCATGTTCATCCACGGTAGCGACCACCATCGCGGTAGGGTCCGCCAGTTTGGCTTCACAAGCCTGAGAGAGCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGACCGCGGCGGCGTAAcc < 1:203318/139‑1 (MQ=255) cgcTGATAAGGCTGACCATGTTCATCCACGGTAGCGACCACCATCGCGGTAGGGTCCGCCAGTTTGGCTTCACAAGCCTGAGAGAGCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGACCGCGGCGGCGTAAcc > 1:80850/1‑139 (MQ=255) aGGCTGACCATGTTCATCCACGGTAGCGACCACCATCGCGGTAGGGTCCGCCAGTTTGGCTTCACAAGCCTGAGAGAGCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGACCGCGGCGGCGTAACCCGCCttt < 2:173374/138‑1 (MQ=255) ccATGTTCATCCACGGTAGCGACCACCATCGCGGTAGGGTCCGCCAGTTTGGCTTCACAAGCCTGAGAGAGCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGACCGCGGCGGCGTAACCCGCCTTTTGTGTAtt > 2:47203/1‑139 (MQ=255) gTTCATCCACGGTAGCGACCACCATCGCGGTAGGGTCCGCCAGTTTGGCTTCACAAGCCTGAGAGAGCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGGAGACCGCGGCGGCGGAACCCGCCGTTGGGGTATTTACg > 2:215284/1‑139 (MQ=255) gTAGGGTCCGCCAGTTTGGCTTCACAAGCCTGAGAGAGCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGACCGCGGCGGCGTAACCCGCCTTTGGTGTATTCACGGCGCAGATGCGCGATTTGCTGCAATtcgt < 1:47203/139‑1 (MQ=255) ggTCCGCCAGTTTGGCTTCACAAGCCTGAGAGAGCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGACCGCGGCGGCGTAACCCGCCTTTGGTGTATTCACGGCGCAGATGCGCGATTTGCTGCAATTCGTCGtt < 1:478513/139‑1 (MQ=255) gCCAGTTTGGCTTCACAAGCCTGAGAGAGCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGGAGACCGCGGCGGCGGAACCCGCCTTTGGGGGATTTCCGGCGGAGAAGGGGGGTTTGCTGCAATTCGCCGTTAt > 1:580739/1‑136 (MQ=255) ccTGAGAGAGCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGACCGCGGCGGCGTAACCCGCCTTTGGTGTATTCACGGCGCAGATGCGCGATTTGCTGCAATTCGTCGTTATCAGACATGGTTTTCTTTACGGa < 1:384830/139‑1 (MQ=255) agagGCAACGTTCAAAAAGGGTTAATGGTTCGGCGGGAAGACCGCGGCGGCGTAACCCGCCTTTGGTCTATTCACGGCGCAGATGCGCGATTTACTTCAATTCGTCGTTAGCAGACATGGTTTTCTTTACGGATTggcg < 2:383984/139‑4 (MQ=255) agagCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGACCGCGGCGGCGTAACCCGCCTTTGGTGTATTCACGGCGCAGATGCGCGATTTGCTGCAATTCGTCGTTATCAGACATGGTTTTCTTTACGGATTGTCa < 2:80850/139‑1 (MQ=255) ccAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGACCGCGGGGGCGGTAACCGCCCTTTGTGGGTTTACGGGGCGGGAGGGCGGTTTTCTGGAATTTGTTGTTTTCCGTCATGGGTTTTTTTTAGGGTTTTCAGTgg > 2:482859/1‑139 (MQ=255) cAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGACCGCGGCGGCGTAACCCGCCTTTGGTGTATTCACGGCGCAGATGCGCGATTTGCTGCAATTCGTCGTTATCAGACATGGTTTTCTTTACGGATTGTCAGTggg < 1:351683/139‑1 (MQ=255) cAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGACCGCGGCGGCGTAACCCGCCTTTGGTGTATTCACGGCGCAGATGCGCGATTTGCTGCAATTCGTCGTTATCAGACATGGTTTTCTTTACGGATTGTCAGTggg < 1:253282/139‑1 (MQ=255) ttCAAAAAGGGTTAATGGATCGGCGGGAAGACCGCGGCGGCGTAACCCGCCTTTGGTGTATTCACGGCGCAGATGCGCGATTTGCTGCAATTCGTCGTTATCAGACATGGTTTTCTTTACGGATTGTCAGTGGGTGACg < 2:143182/139‑1 (MQ=255) tCGGCGGGAAGACCGCGGCGGCGGAACCCCCCTTTGGTGTATTTACCGCGCAGATGCGCGGTTTTCTGCAATTCGTCGTTATCAGAAATGGGTTTCTTTTCGGGTTGTCAGTGGGGGACGCTATTGTGGGCCGcccccg > 2:215716/1‑137 (MQ=255) cggGAAGACCGCGGCGGCGTAACCCGCCTTTGGTGTATTCACGGCGCAGATGCGCGATTTGCTGCAATTCGTCGTTATCAGACATGGTTTTCTTTACGGATTGTCAGTGGGTGACGCTATTGTGCGCCGCCCCTGGaaa < 2:580739/139‑1 (MQ=255) aGACCGCGGCGGCGTAACCCGCCTTTGGTGTATTCACGGCGCAGATGCGCGATTTGCTGCAATTCGTCGTTATCAGACATGGTTTTCTTTACGGATTGTCAGTGGGTGACGCTATTGTGCGCCGCCCCTGGAAAAAtct < 1:482859/139‑1 (MQ=255) | AAACGATGCGCTGATAAGGCTGACCATGTTCATCCACGGTAGCGACCACCATCGCGGTAGGGTCCGCCAGTTTGGCTTCACAAGCCTGAGAGAGCCAACGTTCAAAAAGGGTTAATGGATCGGCGGGAAGATCGCGGCGGCGTAACCCGCCTTTGGTGTATTCACGGCGCAGATGCGCGATTTGCTGCAATTCGTCGTTATCAGACATGGTTTTCTTTACGGATTGTCAGTGGGTGACGCTATTGTGCGCCGCCCCTGGAAAAATCT > NZ_CP009273/1712057‑1712323 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |