| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,258,402 | T→A | I354N (ATC→AAC) | setB → | sugar efflux transporter SetB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,258,402 | 0 | T | A | 100.0% | 85.6 / NA | 22 | I354N (ATC→AAC) | setB | sugar efflux transporter SetB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (10/12); total (10/12) | |||||||||||
GCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTAAAGATGTTTAAGGCGCGGTC > NZ_CP009273/2258270‑2258532 | gCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGTGTGGGCTGGAACATCGc < 1:366740/139‑1 (MQ=255) cAGCTGCTAAATGCTATTTTTATTGGCATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGAt < 2:363106/139‑1 (MQ=255) aTTGGCATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCg > 2:379407/1‑139 (MQ=255) cATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATc < 2:576307/139‑1 (MQ=255) ggcATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATc < 1:436339/139‑1 (MQ=255) cATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCCTCGTCGCCGCGGTCTGGGATTATAAc > 2:436339/1‑139 (MQ=255) aTCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACg < 1:379407/139‑1 (MQ=255) gTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACg < 2:404273/105‑1 (MQ=255) gTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACg > 1:404273/1‑105 (MQ=255) ggCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCAct < 1:360879/139‑1 (MQ=255) cacGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGGATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTg > 1:98365/1‑139 (MQ=255) taCCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTaaa < 2:42059/139‑1 (MQ=255) taCCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTaaa < 2:384890/139‑1 (MQ=255) cTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGGTCTGGAATTTTCACGCTGTGTTTTGGGTTGCGGTGGTGATGATTATAGCCCCTCTGTTTTTTTTTATGCGGCTTTAAGGTGgtt > 2:339993/1‑138 (MQ=255) cTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTgg > 1:119855/1‑59 (MQ=255) cTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTgg < 2:119855/59‑1 (MQ=255) cTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCg < 2:213009/102‑1 (MQ=255) cTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCg > 1:213009/1‑102 (MQ=255) tCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGGATTATCACGCTGTGTTCTGGTTTGCGATGGGGATGATTATCGCCACTCTGTTTTGCTTACTGCGGGTTAAAGATGTTTAAg > 2:18117/1‑139 (MQ=255) tCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGGTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTTAAGATGTTTAAg > 2:581293/1‑139 (MQ=255) ggCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGGATTATCACGCTGTGTTTTGGTTTGCGGTGGGGGTGATTATCGCCACTCTGTTTTTCTTACTGCGGGTTAAAAATGTTTAAGGCGCggg > 1:87925/1‑136 (MQ=255) ggCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTAAAGATGTTTAAGGCGCGGTc < 1:581293/138‑1 (MQ=255) | GCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTAAAGATGTTTAAGGCGCGGTC > NZ_CP009273/2258270‑2258532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |