| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,325,369 | T→G | pseudogene (2423/4515 nt) | BW25113_RS11635 ← | alpha‑2‑macroglobulin family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,325,369 | 0 | T | G | 100.0% | 87.6 / NA | 26 | pseudogene (2423/4515 nt) | BW25113_RS11635 | alpha‑2‑macroglobulin family protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (13/13); total (13/13) | |||||||||||
GTTTATCGGTTGTGAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGATATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACGCCTACCGTTAGC > NZ_CP009273/2325235‑2325503 | gTTTATCGGTTGTGAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCg < 1:320061/137‑1 (MQ=255) cGGTTGTGAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGa > 2:75927/1‑138 (MQ=255) ggTTGTGAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGAt < 2:397411/138‑1 (MQ=255) tgagtgaCGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGa < 2:120245/139‑1 (MQ=255) tgagtgaCGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGa < 1:75927/139‑1 (MQ=255) cGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTg > 1:345503/1‑139 (MQ=255) cGGCATCCATGCCGCGGGATCCACCTCTTCACGCCGTGGACGGTCAAGCATTTTTACTCGCCGCTCGCTGCGGGTAGTTGCGCCATGCGCACCCGGCTCGCTTAAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTg > 2:21658/1‑139 (MQ=255) ggCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTgg < 1:539756/139‑1 (MQ=255) ccGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACg > 1:169052/1‑139 (MQ=255) ggTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGcaca < 2:441241/139‑1 (MQ=255) ggTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGcaca < 2:345503/139‑1 (MQ=255) ctctTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGAGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGc > 2:95451/1‑139 (MQ=255) ttCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGcccc > 2:560842/1‑139 (MQ=255) tGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTa < 1:465760/124‑1 (MQ=255) tGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTa > 2:465760/1‑124 (MQ=255) ggACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAg > 1:298104/1‑138 (MQ=255) gccgcTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGATATTCGgcgc > 2:180899/1‑139 (MQ=255) cgctcgctGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGATATTCGGCGCGa > 1:582444/1‑139 (MQ=255) cgcAACCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGATATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCAtt > 1:429869/1‑139 (MQ=255) aaCCGGCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGATATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCa < 1:351417/139‑1 (MQ=255) gttCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGATATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGAc < 2:293074/137‑1 (MQ=255) gCTCGCTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGATATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGAc > 2:101124/1‑139 (MQ=255) cTGGAGAGCGCCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGATATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACGc < 1:101124/139‑1 (MQ=255) cgcCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGATATTCGGCGCGATTTCTGGTTGCa > 2:32341/1‑104 (MQ=255) cgcCTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGATATTCGGCGCGATTTCTGGTTGCa < 1:32341/104‑1 (MQ=255) cTGGGCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGATATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACGCCTACCGTTAGc < 2:348986/139‑1 (MQ=255) | GTTTATCGGTTGTGAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGATATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACGCCTACCGTTAGC > NZ_CP009273/2325235‑2325503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |