| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,537,187 | T→C | intergenic (‑300/+4) | cysP ← / ← ucpA | thiosulfate/sulfate ABC transporter substrate‑binding protein CysP/SDR family oxidoreductase UcpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,537,187 | 0 | T | C | 100.0% | 100.0 / NA | 30 | intergenic (‑300/+4) | cysP/ucpA | thiosulfate/sulfate ABC transporter substrate‑binding protein CysP/SDR family oxidoreductase UcpA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (18/12); total (18/12) | |||||||||||
CGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGTGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCATCAATCACATTCTGTGTACCGGTTAAATAGCTGGATTCATCCGATGCGAGGAAGGCCGCCAGTTCGCCGACTTCCAGCGGATCGGC > NZ_CP009273/2537052‑2537319 | cgcgGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGaa > 2:91020/1‑139 (MQ=255)cgcgGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGaa > 2:308656/1‑139 (MQ=255) gTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTaa > 2:406399/1‑139 (MQ=255) acaTAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGt < 1:288527/139‑1 (MQ=255) gTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCg > 1:576139/1‑139 (MQ=255) cGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAAt < 2:270311/111‑1 (MQ=255) cGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAAt > 1:270311/1‑111 (MQ=255) cGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCgg > 1:414626/1‑137 (MQ=255) aGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAgtgt > 1:233487/1‑139 (MQ=255) gATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGtgc > 1:111091/1‑139 (MQ=255) gATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGtgc > 2:104968/1‑139 (MQ=255) ttCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGtgctgc > 1:213084/1‑139 (MQ=255) tCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGtgctgc < 1:406399/138‑1 (MQ=255) cACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCat < 2:237466/139‑1 (MQ=255) cccGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCatcaat > 1:279238/1‑138 (MQ=255) aaaTGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCATCAATCACATTCtgtg > 1:303858/1‑139 (MQ=255) aaTGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCATCAATCACATTCTgtgt < 1:557983/139‑1 (MQ=255) aCAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCATCAATCACATTCTGTGTACCg > 1:132119/1‑139 (MQ=255) cAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCATCAATCACATTCTGTGTACCgg < 1:293397/139‑1 (MQ=255) cAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCATCAATCACATTCTGTGTACCgg < 1:138547/139‑1 (MQ=255) tGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATAcc < 1:493287/69‑1 (MQ=255) tGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATAcc > 2:493287/1‑69 (MQ=255) tGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCgg > 1:361886/1‑84 (MQ=255) tGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCgg < 2:361886/84‑1 (MQ=255) aaCTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCATCAATCACATTCTGTGTACCGGTTAAATAGCTGGATTCATc < 2:262784/139‑1 (MQ=255) aGGGAGGAAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCATCAATCACATTCTGTGTACCGGTTAAATAGCTGGATTCATCCGATGCGAGGAAGGCCGCCAGTTCGCCGACTTCCa < 1:104968/139‑1 (MQ=255) aggaAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCATCAATCACATTCTGTGTACCGGTTAAATAGCTGGATTCATCCGATGCGAGGAAGGCCGCCAGTTCGCCGACTTCCAGCg > 2:478024/1‑138 (MQ=255) gaAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCat > 2:362949/1‑58 (MQ=255) gaAACAGAGGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCat < 1:362949/58‑1 (MQ=255) gagGCGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCATCAATCACATTCTGTGTACCGGTTAAATAGCTGGATTCATCCGATGCGAGGAAGGCCGCCAGTTCGCCGACTTCCAGCGGATCggc > 2:199404/1‑137 (MQ=255) | CGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACAGAGGTGAATCAGATACCGACGCTAACCGTCTCCGGCAGTGTGCTGCCGCCATCAATCACATTCTGTGTACCGGTTAAATAGCTGGATTCATCCGATGCGAGGAAGGCCGCCAGTTCGCCGACTTCCAGCGGATCGGC > NZ_CP009273/2537052‑2537319 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |