| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,637,057 | G→A | L196F (CTT→TTT) | rlmN ← | bifunctional tRNA (adenosine(37)‑C2)‑methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,637,057 | 0 | G | A | 100.0% | 110.9 / NA | 28 | L196F (CTT→TTT) | rlmN | bifunctional tRNA (adenosine(37)‑C2)‑methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (16/12); total (16/12) | |||||||||||
GGCGCGTGCAGGGAAATTGCCAGTGCAACGTCGATCATATCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAGCATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACTACGTTAGTGATCGGACGCTGACCGGTGACTTTTGCTGCGCCGACGATTTTCGCCGCACGCCACACCT > NZ_CP009273/2636933‑2637191 | ggCGCGTGCAGGGAAATTGCCAGTGCAACGTCGATCATATCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCg > 1:278009/1‑139 (MQ=255) gggAAATTGCCAGTGCAACGTCGATCATATCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAacgac < 1:152648/139‑1 (MQ=255) ggAAATTGCCAGTGCAACGTCGATCATATCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAacgacg < 2:262418/139‑1 (MQ=255) aTTGCCAGTGCAACGTCGATCATATCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACgttgt < 1:431479/139‑1 (MQ=255) tGCAACGTCGATCATATCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGtt > 2:437869/1‑138 (MQ=255) gTCGATCATATCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAacgacg < 1:170159/121‑1 (MQ=255) gTCGATCATATCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAacgacg > 2:170159/1‑121 (MQ=255) gTCGATCATATCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGagcagc > 2:386849/1‑139 (MQ=255) aTCATATCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCt > 2:298781/1‑139 (MQ=255) aTCATATCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCt < 2:222448/139‑1 (MQ=255) atCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCgcc > 2:508474/1‑138 (MQ=255) tCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCgccc < 1:298781/138‑1 (MQ=255) cGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCgcccat > 1:321457/1‑139 (MQ=255) cAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACt < 2:404329/139‑1 (MQ=255) gcCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCAc < 2:508523/134‑1 (MQ=255) gcCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCAc > 1:508523/1‑134 (MQ=255) gcCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACTACGt > 1:161240/1‑139 (MQ=255) gAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACTACGTTAGt > 2:271183/1‑139 (MQ=255) cTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACTACGTTAGTGAt < 1:555203/139‑1 (MQ=255) cTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACTACGTTAGTGAt < 1:381026/139‑1 (MQ=255) ccGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACTACGTTAGTGATCGGAc > 2:225801/1‑139 (MQ=255) gCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACTACGTTAGTGATCGGACGCTGACCGGTGAc < 1:225801/139‑1 (MQ=255) gACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACgt > 2:328047/1‑65 (MQ=255) gACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACgt < 1:328047/65‑1 (MQ=255) ggCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACTACGTTAGTGATCGGACGCTGACCGGTGACTTTTGCTGCGCCGACGAtttt > 1:504052/1‑139 (MQ=255) gCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACTACGTTAGTGATCGGACGCTGACCGGTGACTTTTGCTGCGCCGACGATTTTc > 2:259898/1‑139 (MQ=255) gCCAAAACCGAAATCATCAAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACTACGTTAGTGATCGGACGCTGACCGGTGACTTTTGCTGCGCCGACGATTTTc > 1:239987/1‑139 (MQ=255) tcaAACATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACTACGTTAGTGATCGGACGCTGACCGGTGACTTTTGCTGCGCCGACGATTTTCGCCGCACGCCACACCt > 2:364310/1‑139 (MQ=255) | GGCGCGTGCAGGGAAATTGCCAGTGCAACGTCGATCATATCGCCCAGTTTATCCAGCGCCGGAACTACACCGGAAGTGGAAAGCGTGACGCGACGTTTAGACAGGCCAAAACCGAAATCATCAAGCATGATTTCCATCGCCGGAACGACGTTGTTCAGGTTGAGCAGCGGCTCGCCCATGCCCATCATCACTACGTTAGTGATCGGACGCTGACCGGTGACTTTTGCTGCGCCGACGATTTTCGCCGCACGCCACACCT > NZ_CP009273/2636933‑2637191 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |