| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,684,806 | T→C | intergenic (‑349/+209) | qseE ← / ← purL | two component system sensor histidine kinase QseE/GlrK/phosphoribosylformylglycinamidine synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,684,806 | 0 | T | C | 100.0% | 80.3 / NA | 23 | intergenic (‑349/+209) | qseE/purL | two component system sensor histidine kinase QseE/GlrK/phosphoribosylformylglycinamidine synthase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (14/9); total (14/9) | |||||||||||
GTGAATGAGCCACTGGTTACTATTATGCAGTAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAATCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGATAATATTAAAATCAATGAGTTAAGTGTCGCCAGAAAGCGACACGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGC > NZ_CP009273/2684686‑2684938 | gTGAATGAGCCACTGGTTACTATTATGCAGTAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTa > 1:217213/1‑138 (MQ=255) aGCCACTGGTTACTATTATGCAGTAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAgaga < 2:379957/139‑1 (MQ=255) gTTACTATTATGCAGTAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACtt < 2:406579/137‑1 (MQ=255) aCTATTATGCAGTAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAgaga < 2:509043/128‑1 (MQ=255) aCTATTATGCAGTAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAgaga > 1:509043/1‑128 (MQ=255) tGCAGTAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACtta > 1:472296/1‑139 (MQ=255) tGCAGTAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACtta > 2:124101/1‑139 (MQ=255) cAGTAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACttat > 2:581423/1‑138 (MQ=255) tAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCTCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGa < 1:563974/139‑1 (MQ=255) tAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACtgtg > 2:172272/1‑102 (MQ=255) tAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACtgtg < 1:172272/102‑1 (MQ=255) tAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACttat > 2:200150/1‑135 (MQ=255) tAACTGTGCCAATAAAGAAAATAGTTTGGTAAAGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACttat > 2:382916/1‑135 (MQ=255) gAAAATAGTTTGGTAAAGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAGCCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGATAATATTAAAATCAAt < 1:382916/139‑1 (MQ=255) tGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGATAATATTAAAATCAATGAGTTAAgtg > 2:243965/1‑139 (MQ=255) gCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACt > 2:302050/1‑72 (MQ=255) gCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACt < 1:302050/72‑1 (MQ=255) gCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGATAATATTAAAATCAATGAGTTAAGTGTCGCCAGAAAGCGACACGGCaaa > 2:164886/1‑139 (MQ=255) gCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGATAATATTAAAATCAATGAGTTAAGTGTCGCCAGAAAGCGACACGGCaaa > 2:16993/1‑139 (MQ=255) cctccGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGATAATATTAAAATCAATGAGTTAAGTGTCGCCAGAAAGCGACACGGCAAACCACCCATTGTCGTGATTTa > 1:324820/1‑139 (MQ=255) ctccGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATaa > 1:573017/1‑59 (MQ=255) ctccGCTGTTTGAATGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATaa < 2:573017/59‑1 (MQ=255) tGTAAACCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGATAATATTAAAATCAATGAGTTAAGTGTCGCCAGAAAGCGACACGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGc < 2:324820/139‑1 (MQ=255) | GTGAATGAGCCACTGGTTACTATTATGCAGTAACTGTGCCAATAAAGAAAATAGTTTGGTAACGTACTGATTATACGTTGCTTTGAGGGGTTTATGTCTCCTCCGCTGTTTGAATGTAAATCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGATAATATTAAAATCAATGAGTTAAGTGTCGCCAGAAAGCGACACGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGC > NZ_CP009273/2684686‑2684938 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |