| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,959,152 | A→G | F82S (TTC→TCC) | lgt ← | prolipoprotein diacylglyceryl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,959,152 | 0 | A | G | 100.0% | 81.2 / NA | 24 | F82S (TTC→TCC) | lgt | prolipoprotein diacylglyceryl transferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (13/11); total (13/11) | |||||||||||
CGTTTAGTACGGCGGGCGAAGATAATCATCACCACGATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATT > NZ_CP009273/2959032‑2959286 | cGTTTAGTACGGCGGGCGAAGATAATAATCACCACGAAAAAGCCAAACAAGCCGCCGGGGGAAGACATGCCGCCCGCCCCCACACGGGACAGATACAGCGGGGCGGCCCTAAAAAGCGGGGGATTGTagaacagaaaa > 1:270615/1‑136 (MQ=255) gTTTAGTACGGCGGGGGGAGATAATCATCACCACGATAAAGCCAATCAGGCCGCCGTGGGAAGACATGCCGCCGTCCCCGACACGGGACAGATACAGCGGATCGGCCATAAACTGCGGGGGATTGTAGAAAAAAACAt > 1:51096/1‑138 (MQ=255) tAGTACGGCGGGCGAAGATAATCATCACCACGATAAAGCCAATCAAGCCGCCGCGGAAAGAAATGCCGCCCGCCCAGACACGGGACAGATAAAGCGGGTCGGCCATAAAATGCGGGGGAATGTAGAACAGAAAATaaa > 1:243255/1‑137 (MQ=255) ggcgggcgAAGATAATCATCACCACGATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACg < 1:43519/139‑1 (MQ=255) tAATCATCACCACGATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGaa < 2:479962/139‑1 (MQ=255) ccacGATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAg < 2:396854/139‑1 (MQ=255) cGATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAgg > 1:190879/1‑137 (MQ=255) aTAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGc < 1:175567/139‑1 (MQ=255) gCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGGCACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCa < 1:476778/139‑1 (MQ=255) ccAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCa > 1:414542/1‑138 (MQ=255) aGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGt < 2:101026/138‑1 (MQ=255) tGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCACCTTCAttttt > 2:149343/1‑139 (MQ=255) aaCAGATACAGCGGATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAAcc > 2:232367/1‑56 (MQ=255) aaCAGATACAGCGGATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAAcc < 1:232367/56‑1 (MQ=255) gATACAGCGGATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGAtt < 2:243255/139‑1 (MQ=255) tACAGCGGATCGGCCATAAACTGCGGGGAATTGTagaac > 1:2574/1‑39 (MQ=255) tACAGCGGATCGGCCATAAACTGCGGGGAATTGTagaac < 2:2574/39‑1 (MQ=255) ggATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGccc > 2:214379/1‑136 (MQ=255) ggATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGccc < 1:214379/136‑1 (MQ=255) gATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCa < 1:571712/80‑1 (MQ=255) gATCGGCCATAAACTGCGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCa > 2:571712/1‑80 (MQ=255) cGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACAtt > 2:245020/1‑139 (MQ=255) cGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACAtt > 2:251248/1‑139 (MQ=255) cGGGGAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACAtt > 2:93322/1‑139 (MQ=255) | CGTTTAGTACGGCGGGCGAAGATAATCATCACCACGATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATT > NZ_CP009273/2959032‑2959286 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |