| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,349,491 | T→C | S470P (TCC→CCC) | gltB → | glutamate synthase large subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,349,491 | 0 | T | C | 100.0% | 89.5 / NA | 27 | S470P (TCC→CCC) | gltB | glutamate synthase large subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (14/13); total (14/13) | |||||||||||
TGGATGGAGAAAAACGTCCGCCGACTGGTACCGTTTGAAGATCTGCCCGATGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACTCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATGGGCGATGATACCCCATTCGCCGTGCTCTCCAGTCAGCCGCGCATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACT > NZ_CP009273/3349356‑3349625 | tggatggaGAAAAACGTCCGCCGACTGGTACCGTTTGAAGATCTGCCCGATGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCg > 1:389148/1‑139 (MQ=255) gatggaGAAAAACGTCCGCCGACTGGTACCGTTTGAAGATCTGCCCGATGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGt > 2:350004/1‑138 (MQ=255) gatggaGAAAAACGTCCGCCGACTGGTACCGTTTGAAGATCTGCCCGATGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGt > 1:2772/1‑138 (MQ=255) atggaGAAAAACGTCCGCCGACTGGTACCGTTTGAAGATCTGCCCGATGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTaa < 1:350004/139‑1 (MQ=255) agaAAAACGTCCGCCGACTGGTACCGTTTGAAGATCTGCCCGATGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTAATTcg > 1:437110/1‑139 (MQ=255) gTACCGTTTGAAGATCTGCCCGATGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTc < 1:77098/139‑1 (MQ=255) tGAAGATCTGCCCGATGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGc < 1:195816/138‑1 (MQ=255) tGCCCGATGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTc > 1:82502/1‑139 (MQ=255) cccGATGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGa < 2:442091/139‑1 (MQ=255) aTGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATggg < 1:305527/139‑1 (MQ=255) tGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATGGGc > 2:51450/1‑139 (MQ=255) gacgacgacACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATGGGCGATGATACCCCATTCGCCGTGctct > 2:493032/1‑139 (MQ=255) gCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCg < 1:438344/93‑1 (MQ=255) gCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCg > 2:438344/1‑93 (MQ=255) aGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTaa > 1:299757/1‑36 (MQ=255) aGTTTAACTACAGCGCGGAAGAGCTGGACCCCGTaa < 2:299757/36‑1 (MQ=255) tttAACTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATGGGCGATGATACCCCATTCg > 1:484684/1‑97 (MQ=255) tttAACTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATGGGCGATGATACCCCATTCg < 2:484684/97‑1 (MQ=255) aCTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATGGGCGATGATACCCCATTCGCCGTGCTCTCCAGTCAGCCGCGCATTATTTACGACTACTTCCGCca < 2:9466/139‑1 (MQ=255) aCTACAGCGCGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATGGGCGATGATACCCCATTCGCCGTGCTCTCCAGTCAGCCGCGCATTATTTACGACTACTTCCGCca < 1:62644/139‑1 (MQ=255) gcgcGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATggg < 2:374062/70‑1 (MQ=255) gcgcGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATggg > 1:374062/1‑70 (MQ=255) gcgcGGAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATGGGCGATGATACCCCATTCGCCGTGCTCTCCAGTCAGCCGCGCATTATTTACGACTACTTCCGCCAGCAGtt > 1:490429/1‑139 (MQ=255) ggAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATGGGCGATGATACCCCATTCGCCGTGCTCTCCAGTCAGCCGCGCATTATTTACGACTACTTCCGCCAGCAGTTTGcc < 1:493032/139‑1 (MQ=255) ggAAGAGCTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATGGGCGATGATACCCCATTCGCCGTGCTCTCCAGTCAGCCGCGCATTATTTACGACTACTTCCGCCAGCAGTTTGcc > 1:11767/1‑139 (MQ=255) cTGGACCCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATGGGCGATGATACCCCATTCGCCGTGCTCTCCAGTCAGCCGCGCATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGa > 1:97017/1‑139 (MQ=255) gACCCCGTAATTCGCGTATGGGGCAAAAACGGTCGGGAAGGGGTCGGTTCGATGGGCGTTGATACCCCATTCGCCGTGCTCTCCAGTCAGCCGCGCTTTATTTACGCCTACTTCCGCCAGCAGTTTGCCCAGGTGACt < 2:389148/138‑1 (MQ=255) | TGGATGGAGAAAAACGTCCGCCGACTGGTACCGTTTGAAGATCTGCCCGATGAAGAAGTGGGTAGCCGCGAACTGGACGACGACACGCTTGCCAGCTACCAGAAACAGTTTAACTACAGCGCGGAAGAGCTGGACTCCGTAATTCGCGTACTGGGCGAAAACGGTCAGGAAGCGGTCGGTTCGATGGGCGATGATACCCCATTCGCCGTGCTCTCCAGTCAGCCGCGCATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACT > NZ_CP009273/3349356‑3349625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |