| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,183,394 | G→C | G37G (GGC→GGG) | thiF ← | thiazole biosynthesis adenylyltransferase ThiF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,183,394 | 0 | G | C | 100.0% | 91.5 / NA | 27 | G37G (GGC→GGG) | thiF | thiazole biosynthesis adenylyltransferase ThiF |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (15/12); total (15/12) | |||||||||||
GGGCGATCGATATCTTCAGTGGTAAAGAGGATTTGTCGTTGCAGATTGCTTAAATGCACATCGTCGTCATCTGCCAGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCACGGTCATTCATCGCCAACTCCTGCAATT > NZ_CP009273/4183260‑4183521 | gggCGATCGATATCTTCAGTGGTAAAGAGGATTTGTCGTTGCAGATTGCTTAAATGCACATCGTCGTCATCTGCCAGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCa < 2:556806/139‑1 (MQ=255) cgatcgatATCTTCAGTGGTAAAGAGGATTTGTCGTTGCAGATTGCTTAAATGCACATCGTCGTCATCTGCCAGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGAc > 1:140083/1‑139 (MQ=255) atcgatATCTTCAGTGGTAAAGAGGATTTGTCGTTGCAGATTGCTTAAATGCACATCGTCGTCATCTGCCAGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCg < 1:420003/139‑1 (MQ=255) agGATTTGTCGTTGCAGATTGCTTAAATGCACATCGTCGTCATCTGCCAGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGa < 1:69433/139‑1 (MQ=255) gATTTGTCGTTGCAGATTGCTTAAATGCACATCGTCGTCATCTGCCAGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAg > 2:314867/1‑138 (MQ=255) caTCGTCGTCATCTGCCAGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATAtc > 2:194028/1‑139 (MQ=255) caTCGTCGTCATCTGCCAGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATAtc > 1:435/1‑139 (MQ=255) tcgtcgTCATCTGCCAGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATAtcgt < 2:575649/139‑1 (MQ=255) cgtcgtCATCTGCCAGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATAtcgtc > 1:509470/1‑139 (MQ=255) gtcATCTGCCAGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAg < 2:435/138‑1 (MQ=255) aGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTtgctgc < 1:319774/105‑1 (MQ=255) aGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTtgctgc > 2:319774/1‑105 (MQ=255) tACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTggcgg < 1:314867/139‑1 (MQ=255) cAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCa > 1:235360/1‑59 (MQ=255) cAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCa < 2:235360/59‑1 (MQ=255) cGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATaa > 1:548927/1‑139 (MQ=255) ccGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCa > 1:576751/1‑139 (MQ=255) ccGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCa > 2:308583/1‑139 (MQ=255) ccAGGTACAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCACGGtcatt < 2:548927/139‑1 (MQ=255) cAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCACGGTCATTCATCGcc < 2:4247/139‑1 (MQ=255) cAGCGCAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCACGGTCATTCATCGcc < 1:160183/139‑1 (MQ=255) cgcAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCtat > 2:21061/1‑107 (MQ=255) cgcAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCtat < 1:21061/107‑1 (MQ=255) cgcAGCAGGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCACGGTCATTCATCGCCAAc > 1:22702/1‑139 (MQ=255) cagGTGTACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCGGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCACGGTCATTCATCGCCAACTCCTg > 1:155405/1‑139 (MQ=255) gtACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCACGGTCATTCATCGCCAACTCCTGCAAtt > 2:222077/1‑139 (MQ=255) gtACCCAGCCCCCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCACGGTCATTCATCGCCAACTCCTGCAAtt > 1:502135/1‑139 (MQ=255) | GGGCGATCGATATCTTCAGTGGTAAAGAGGATTTGTCGTTGCAGATTGCTTAAATGCACATCGTCGTCATCTGCCAGTACCAGCGTCCCGACGCCAGCGCCCGCCAGGTACAGCGCAGCAGGTGTACCCAGCCCGCCCAGACCGATAATCAGCACCTGGCTGTCGAGCAGTTTTTGCTGCCCGTCCAGAGCGATATCGTCGAGCAGGATTTGGCGGCTATAACGCATAAAGTCACGGTCATTCATCGCCAACTCCTGCAATT > NZ_CP009273/4183260‑4183521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |