| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,321,803 | T→C | H495H (CAT→CAC) | proP → | glycine betaine/L‑proline transporter ProP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,321,803 | 0 | T | C | 100.0% | 100.0 / NA | 30 | H495H (CAT→CAC) | proP | glycine betaine/L‑proline transporter ProP |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (15/15); total (15/15) | |||||||||||
GAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTG > NZ_CP009273/4321690‑4321930 | gAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGaaa > 1:209983/1‑139 (MQ=255) aGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACg > 2:217174/1‑139 (MQ=255) cGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGa < 2:114922/139‑1 (MQ=255) tcgAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAAtt < 2:28614/104‑1 (MQ=255) tcgAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAAtt > 1:28614/1‑104 (MQ=255) atatCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGc > 2:28918/1‑138 (MQ=255) gAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAAtt < 1:20412/138‑1 (MQ=255) gAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTg < 2:42456/139‑1 (MQ=255) aGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTg > 2:376644/1‑138 (MQ=255) cGATGATATTGACCACGGGATTGCCTGTGTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAgg < 2:568899/139‑1 (MQ=255) ttGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACtt < 2:209983/138‑1 (MQ=255) cACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAAtctc > 2:272246/1‑139 (MQ=255) cGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATctct > 1:348674/1‑138 (MQ=255) gATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATAc < 1:376644/139‑1 (MQ=255) ttGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACgg < 2:7039/64‑1 (MQ=255) ttGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACgg > 1:7039/1‑64 (MQ=255) aaccGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAACCGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGt < 1:104647/136‑1 (MQ=255) aaaCGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGt < 1:217174/139‑1 (MQ=255) cccGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGAc > 1:362084/1‑63 (MQ=255) cccGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGAc < 2:362084/63‑1 (MQ=255) cccGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACg > 2:394243/1‑64 (MQ=255) cccGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACg < 1:394243/64‑1 (MQ=255) gTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTg > 1:47685/1‑76 (MQ=255) gTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTg < 2:47685/76‑1 (MQ=255) gTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAgg > 2:221059/1‑87 (MQ=255) gTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAgg < 1:221059/87‑1 (MQ=255) gTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTg > 1:297472/1‑139 (MQ=255) gTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTg < 1:457435/139‑1 (MQ=255) tGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTg > 2:127647/1‑138 (MQ=255) tGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTg > 1:544990/1‑138 (MQ=255) | GAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTG > NZ_CP009273/4321690‑4321930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |