| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,026,705 | A→C | V57G (GTG→GGG) | yccA ← | FtsH protease modulator YccA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,026,705 | 0 | A | C | 95.1% | 136.2 / 1.0 | 41 | coding (170/660 nt) | yccA | FtsH protease modulator YccA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (20/19); minor base . (1/1); total (21/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.52e-01 | |||||||||||
TCCGGCAGACAGATAGGTGTTCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCACCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGAT > NZ_CP009273/1026572‑1026839 | tCCGGCAGACAGATAGGTGTTCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGc > 1:394314/1‑139 (MQ=255) ttCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCg > 1:9179/1‑136 (MQ=255) ttCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCg > 1:558605/1‑136 (MQ=255) aaTAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGgc < 2:209267/139‑1 (MQ=255) aaTAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGgc < 2:31081/139‑1 (MQ=255) gTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCAt > 1:133624/1‑139 (MQ=255) aGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa > 1:321888/1‑139 (MQ=255) aGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa < 2:283666/139‑1 (MQ=255) ggATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCAc < 2:133624/139‑1 (MQ=255) cAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCAt > 2:61076/1‑123 (MQ=255) cAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCAt < 1:61076/123‑1 (MQ=255) gAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa < 2:62723/126‑1 (MQ=255) gAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa > 1:62723/1‑126 (MQ=255) tGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAg > 2:454798/1‑139 (MQ=255) tGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAg > 1:180814/1‑139 (MQ=255) agaTAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGc > 1:156589/1‑136 (MQ=255) agaTAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGc < 2:156589/136‑1 (MQ=255) ggTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCt > 1:200977/1‑138 (MQ=255) tCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCa > 1:139496/1‑126 (MQ=255) tCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCAGCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCa < 2:139496/126‑1 (MQ=255) tCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCC‑CCAGCGTCAGAATCAGACCCGGAGATGGCAGCAt > 1:32681/1‑84 (MQ=255) tCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCC‑CCAGCGTCAGAATCAGACCCGGAGATGGCAGCAt < 2:32681/84‑1 (MQ=255) ttCGCCGTTTTATAGGTCAGGGACATCAAACCATACATACCCCCCAGCGGCAGAATCAGACGCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAAt < 2:94767/139‑1 (MQ=255) ttCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAAt < 2:383444/139‑1 (MQ=255) ttCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAAt < 2:321888/139‑1 (MQ=255) cGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTa < 2:200977/139‑1 (MQ=255) gTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa > 1:453027/1‑76 (MQ=255) gTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa < 2:453027/76‑1 (MQ=255) tataGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACg > 1:140931/1‑139 (MQ=255) gTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCgg > 1:259432/1‑50 (MQ=255) gTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCgg < 2:259432/50‑1 (MQ=255) cAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGGTCAGCAGAACATAGGTATTACGCAGCAcc > 2:100737/1‑139 (MQ=255) aGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCt > 2:180759/1‑139 (MQ=255) aaCATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTAt < 1:560280/139‑1 (MQ=255) ccATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCA‑CTTATGGGTGCTAAg < 2:266207/139‑1 (MQ=255) catacataCCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAg < 2:78646/139‑1 (MQ=255) tacatacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAg > 1:391318/1‑137 (MQ=255) acatacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTa < 2:310998/110‑1 (MQ=255) acatacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTa > 1:310998/1‑110 (MQ=255) catacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAg < 1:63942/138‑1 (MQ=255) acCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGAt > 1:244703/1‑139 (MQ=255) ccccccAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGAt < 2:391318/138‑1 (MQ=255) | TCCGGCAGACAGATAGGTGTTCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCACCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGAT > NZ_CP009273/1026572‑1026839 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |