| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,161,212 | T→C | intergenic (+71/‑329) | ycfP → / → ndh | alpha/beta hydrolase YcfP/NADH‑quinone dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,161,212 | 0 | T | C | 100.0% | 95.6 / NA | 28 | intergenic (+71/‑329) | ycfP/ndh | alpha/beta hydrolase YcfP/NADH‑quinone dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (10/18); total (10/18) | |||||||||||
CACAAATTCAAGAATATCTCCCCGCATTTACAGCGCATTAAAGCGTTCAAAACCCTCGGGTAAATGCCCTCGTCGCATCAGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCT > NZ_CP009273/1161079‑1161341 | cacaAATTCAAGAATATCTCCCCGCATTTACAGCGCATTAAAGCGTTCAAAACCCTCGGGTAAATGCCCTCGTCGCATCAGGTAGCCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCAcg < 2:268936/139‑1 (MQ=255) aGAATATCTCCCCGCATTTACAGCGCATTAAAGCGTTCAAAACCCTCGGGTAAATGCCCTCGTCGCATCAGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGa < 2:414078/139‑1 (MQ=255) cGCATTTACAGCGCATTAAAGCGTTCAAAACCCTCGGGTAAATGCCCTCGTCGCATCAGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATc < 1:523612/139‑1 (MQ=255) cgcATTAAAGCGTTCAAAACCCTCGGGTAAATGCCCTCGTCGCATCAGGTAACCTTGCCGGTCCCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATg < 1:186984/139‑1 (MQ=255) cgcATTAAAGCGTTCAAAACCCTCGGGTAAATGCCCTCGTCGCATCAGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATg < 2:254988/139‑1 (MQ=255) cATTAAAGCGTTCAAAACCCTCGGGTAAATGCCCTCGTCGCATCAGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATgcg > 1:56456/1‑139 (MQ=255) tCAAAACCCTCGGGTAAATGCCCTCGTCGCATCAGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAg > 1:370401/1‑139 (MQ=255) cAAAACCCTCGGGTAAATGCCCTCGTCGCATCAGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAg < 1:565478/138‑1 (MQ=255) aaaaCCCTCGGGTAAATGCCCTCGTCGCATCAGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGc > 2:520632/1‑139 (MQ=255) tAAATGCCCTCGTCGCATCAGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGcc < 2:69711/139‑1 (MQ=255) tcgtcgCATCAGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATaca > 2:53076/1‑139 (MQ=255) gtcgCATCAGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACAcc > 1:357406/1‑139 (MQ=255) aGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCAct < 1:383792/138‑1 (MQ=255) aGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCAct < 1:520632/138‑1 (MQ=255) cTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCg > 1:506320/1‑69 (MQ=255) cTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCg < 2:506320/69‑1 (MQ=255) tGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCt < 1:201877/125‑1 (MQ=255) tGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCt > 2:201877/1‑125 (MQ=255) ccGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCa < 2:334223/125‑1 (MQ=255) ccGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCa > 1:334223/1‑125 (MQ=255) ccGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCActct > 1:92906/1‑139 (MQ=255) cgcTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTc < 2:370401/139‑1 (MQ=255) gcTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCa < 2:545050/139‑1 (MQ=255) cTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCAct > 2:47364/1‑112 (MQ=255) cTCCGAATTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCAct < 1:47364/112‑1 (MQ=255) aaTTCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAaataat < 2:342826/139‑1 (MQ=255) ttCTGTGGGTCGGATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAAtaataa < 1:240121/139‑1 (MQ=255) gATAAGGCGCCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAActct < 1:53076/139‑1 (MQ=255) | CACAAATTCAAGAATATCTCCCCGCATTTACAGCGCATTAAAGCGTTCAAAACCCTCGGGTAAATGCCCTCGTCGCATCAGGTAACCTTGCCGGTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCT > NZ_CP009273/1161079‑1161341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |