| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,274,887 | A→G | intergenic (+83/‑433) | narK → / → narG | nitrate transporter NarK/nitrate reductase subunit alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,274,887 | 0 | A | G | 100.0% | 106.7 / NA | 30 | intergenic (+83/‑433) | narK/narG | nitrate transporter NarK/nitrate reductase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (14/16); total (14/16) | |||||||||||
GGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATG > NZ_CP009273/1274774‑1275012 | ggCGGTATATGGT‑GGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTa > 2:283225/1‑138 (MQ=255) cGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTaaa < 1:197246/139‑1 (MQ=255) ggTATATGGT‑GGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAAcc < 1:283225/139‑1 (MQ=255) tataTGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTgccgcc < 2:146408/126‑1 (MQ=255) tataTGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTgccgcc > 1:146408/1‑126 (MQ=255) tatGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGa < 1:564496/138‑1 (MQ=255) gCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGgttcatt < 2:504360/105‑1 (MQ=255) gCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGgttcatt > 1:504360/1‑105 (MQ=255) gCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCt < 1:293557/117‑1 (MQ=255) gCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCt > 2:293557/1‑117 (MQ=255) gCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTaaa < 2:35074/126‑1 (MQ=255) gCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTaaa > 1:35074/1‑126 (MQ=255) gCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGAATtata > 1:287645/1‑136 (MQ=255) ggTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGt > 1:417384/1‑139 (MQ=255) ttACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTcg < 1:376097/139‑1 (MQ=255) cATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAAcc < 1:365164/86‑1 (MQ=255) cATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAAcc > 2:365164/1‑86 (MQ=255) ctgcggctgcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGaa > 1:254267/1‑83 (MQ=255) ctgcggctgcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGaa < 2:254267/83‑1 (MQ=255) gTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCAt < 2:222029/139‑1 (MQ=255) ccccAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGaa > 1:449811/1‑64 (MQ=255) ccccAGTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGaa < 2:449811/64‑1 (MQ=255) gTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTgcg > 1:373774/1‑93 (MQ=255) gTCACTTACTTTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTgcg < 2:373774/93‑1 (MQ=255) acttacttTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTa < 2:287645/139‑1 (MQ=255) acttacttTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTa < 2:417384/139‑1 (MQ=255) tacttTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTgcg > 1:200484/1‑87 (MQ=255) tacttTAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTgcg < 2:200484/87‑1 (MQ=255) tAGTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTtata > 2:317415/1‑139 (MQ=255) gTAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATg > 1:36693/1‑139 (MQ=255) tAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTaaa > 2:27362/1‑40 (MQ=255) tAAGCTCCTGGGGTTCATTCACTTGCCGCCTTCCTGTaaa < 1:27362/40‑1 (MQ=255) | GGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATG > NZ_CP009273/1274774‑1275012 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |