New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | = 3144055 | 105 (1.680) | 8 (0.180) +ATTTTGCGTTTGTAATCAGTCTCG |
4/114 | 2.8 | 9.8% | intergenic (+150/+122) | yghA/exbD | NADP(+)‑dependent aldehyde reductase/TonB system transport protein ExbD |
? | NZ_CP009273 | = 3632715 | 104 (1.660) | intergenic (+214/+30) | pitA/uspB | inorganic phosphate transporter PitA/universal stress protein UspB | |||||
Rejected: Frequency below/above cutoff threshold. |
GATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3144020‑3144055 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGGGCCAGTAAACTGACCCGCTCGAGAC < NZ_CP009273/3632715‑3632686 |||||||||||||||||||||||| GATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGCCAGTAAACTGACCCGCTCGAGAC < 1:1129493/90‑1 GATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGCCAGTAAACTGACCCGCTCGAGAC > 2:1129494/1‑90 GCCTGATAAGGGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGC > 1:658679/1‑53 GCCTGATAAGGGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGC < 2:658679/53‑1 GCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGC > 1:338712/1‑53 GCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGC < 2:338712/53‑1 GATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATC < 1:1409788/39‑1 GATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATC > 2:1409789/1‑39 TCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGCCAGTAAACTGACC < 1:760774/51‑1 TCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGCCAGTAAACTGACC > 2:760774/1‑51 |||||||||||||||||||||||| GATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3144020‑3144055 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGGGCCAGTAAACTGACCCGCTCGAGAC < NZ_CP009273/3632715‑3632686 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |