| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3375198 = | 24 (1.200) | 3 (0.170) | 3/148 | 1.6 | 12.9% | coding (1097/1368 nt) | degQ | serine endoprotease DegQ |
| ? | NZ_CP009273 | 3375228 = | 19 (1.070) | coding (1127/1368 nt) | degQ | serine endoprotease DegQ | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCA > NZ_CP009273/3375140‑3375315 | tcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttccagcgctggcgtgatcatttcagcgctggaa < 1:361566‑M2/2‑1 (MQ=255)cGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGaa < 2:425366/90‑1 (MQ=255) gCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCaa < 1:588500/90‑1 (MQ=255) ccatcttttagctgaccatcgctcaacgttgcaccttccagcgctggcgtgatcatttcagcgctggAAGGTGCAACGTTGAGCGATGGt < 2:510240‑M2/23‑1 (MQ=255) catcttttagctgaccatcgctcaacgttgcaccttccagcgctggcgtgatcatttcagcgctggAAGGTGCAACGTTGAGCGATGGTc < 1:118170‑M2/24‑1 (MQ=255) gAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAg > 2:309874/1‑90 (MQ=255) aaGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGc < 1:238357/90‑1 (MQ=255) gTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTa > 1:278089/1‑90 (MQ=255) cGCTCGATACCAGCCCCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGt < 2:564854/80‑1 (MQ=255) cGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGt > 1:564854/1‑80 (MQ=255) gaccatcgctcaacgttgcaccttCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATg < 1:118170‑M1/66‑1 (MQ=255) accatcgctcaacgttgcaccttCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATgg < 2:510240‑M1/67‑1 (MQ=255) gCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCa > 1:332174/1‑70 (MQ=255) gCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCa < 2:332174/70‑1 (MQ=255) gCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCaaa > 2:549803/1‑89 (MQ=255) gCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCaaa < 1:549803/89‑1 (MQ=255) gCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAg < 1:64033/90‑1 (MQ=255) gCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAg > 1:48034/1‑90 (MQ=255) gCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAg > 1:375360/1‑90 (MQ=255) ctctTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTAt > 1:486515/1‑90 (MQ=255) cgtcgGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTaaaa < 2:464363/90‑1 (MQ=255) ttCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGa < 1:361566‑M1/88‑1 (MQ=255) GCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGt > 1:583367‑M1/1‑50 (MQ=255) GCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGt < 2:583367‑M1/50‑1 (MQ=255) CGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGt > 2:278089‑M1/1‑90 (MQ=255) GAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTc > 1:469767‑M1/1‑46 (MQ=255) GAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTc < 2:469767‑M1/46‑1 (MQ=255) gATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAgg > 2:442461/1‑90 (MQ=255) cGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAATAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGcc > 1:328284/1‑90 (MQ=255) ccAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCa < 2:118170/90‑1 (MQ=255) agcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAgc < 1:242336‑M2/82‑1 (MQ=255) gcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATg > 2:147423‑M2/8‑43 (MQ=255) gcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATg < 1:147423‑M2/36‑1 (MQ=255) gcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAgct > 2:394605‑M2/8‑90 (MQ=255) ggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCa > 2:7977‑M2/3‑90 (MQ=255) | CGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCA > NZ_CP009273/3375140‑3375315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |